Four cobalt(III) polypyridyl complexes, [Co(phen)(3-n)(dpq)(n)](3+) (phen = 1,10-phenanthroline, dpq = dipyrido[3,2-f:2',3'-h]-quinoxaline) (n = 0, 1, 2, and 3) were synthesized and the influences of the dpq ligand on the photophysical properties, electrochemical properties, DNA binding affinities, as well as photonuclease activities of the complexes, were examined in detail. The presence of dpq ligand increases the DNA binding affinities of the corresponding complexes remarkably with respect to [Co(phen)(3)](3+). With the sequential substitution of phen ligand by dpq ligand, the O-1(2) quantum yields of the corresponding complexes are enhanced greatly. As a result, the photonuclease activities follow the order of [Co(phen)(3)](3+) > [Co(phen)(dpq)(2)](3+) > [Co(phen)(2)(dpq)](3+) >> [Co(phen)(3)](3+). It was found all the examined complexes can generate (OH)-O-center dot upon UV irradiation, and (OH)-O-center dot is also involved in DNA photocleavage as reactive oxygen species. (C) 2009 Elsevier Inc. All rights reserved.