共 73 条
Cell-free transcription-translation: engineering biology from the nanometer to the millimeter scale
被引:58
作者:

Garenne, David
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Minnesota, Phys & Nanotechnol, 115 Union St SE, Minneapolis, MN 55455 USA Univ Minnesota, Phys & Nanotechnol, 115 Union St SE, Minneapolis, MN 55455 USA

论文数: 引用数:
h-index:
机构:
机构:
[1] Univ Minnesota, Phys & Nanotechnol, 115 Union St SE, Minneapolis, MN 55455 USA
关键词:
FREE PROTEIN-SYNTHESIS;
MEMBRANE-PROTEIN;
GENE-EXPRESSION;
SYNTHETIC BIOLOGY;
SYSTEM;
EVOLUTION;
IMPACT;
CHIP;
D O I:
10.1016/j.copbio.2018.10.007
中图分类号:
Q5 [生物化学];
学科分类号:
071010 ;
081704 ;
摘要:
Cell-free transcription-translation (TXTL) has become a highly versatile technology to construct, characterize and interrogate genetically programmed biomolecular systems implemented outside living organisms. By recapitulating gene expression in vitro, TXTL offers unparalleled flexibility to take apart, engineer and analyze quantitatively the effects of chemical, physical and genetic contexts on the function of biochemical systems, from simple regulatory elements to millimeter-scale pattern formation. Here, we review the capabilities of the current cell-free platforms for executing DNA programs in vitro. We describe the recent advances in programming using cell-free expression, a multidisciplinary playground that has enabled a myriad of novel applications in synthetic biology, biotechnology, and biological physics. Finally, we discuss the challenges and perspectives in the research area of TXTL-based constructive biology.
引用
收藏
页码:19 / 27
页数:9
相关论文
共 73 条
[61]
Creating a Completely "Cell-free" System for Protein Synthesis
[J].
Smith, Mark Thomas
;
Bennett, Anthony M.
;
Hunt, Jeremy M.
;
Bundy, Bradley C.
.
BIOTECHNOLOGY PROGRESS,
2015, 31 (06)
:1716-1719

Smith, Mark Thomas
论文数: 0 引用数: 0
h-index: 0
机构:
Brigham Young Univ, Dept Chem Engn, Provo, UT 84602 USA Brigham Young Univ, Dept Chem Engn, Provo, UT 84602 USA

Bennett, Anthony M.
论文数: 0 引用数: 0
h-index: 0
机构:
Brigham Young Univ, Dept Chem Engn, Provo, UT 84602 USA Brigham Young Univ, Dept Chem Engn, Provo, UT 84602 USA

Hunt, Jeremy M.
论文数: 0 引用数: 0
h-index: 0
机构:
Brigham Young Univ, Dept Chem Engn, Provo, UT 84602 USA Brigham Young Univ, Dept Chem Engn, Provo, UT 84602 USA

Bundy, Bradley C.
论文数: 0 引用数: 0
h-index: 0
机构:
Brigham Young Univ, Dept Chem Engn, Provo, UT 84602 USA Brigham Young Univ, Dept Chem Engn, Provo, UT 84602 USA
[62]
Rapidly Characterizing the Fast Dynamics of RNA Genetic Circuitry with Cell-Free Transcription Translation (TX-TL) Systems
[J].
Takahashi, Melissa K.
;
Chappell, James
;
Hayes, Clarmyra A.
;
Sun, Zachary Z.
;
Kim, Jongmin
;
Singhal, Vipul
;
Spring, Kevin J.
;
Al-Khabouri, Shaima
;
Fall, Christopher P.
;
Noireaux, Vincent
;
Murray, Richard M.
;
Lucks, Julius B.
.
ACS SYNTHETIC BIOLOGY,
2015, 4 (05)
:503-515

Takahashi, Melissa K.
论文数: 0 引用数: 0
h-index: 0
机构:
Cornell Univ, Sch Chem & Biomol Engn, Ithaca, NY 14850 USA
Cold Spring Harbor Lab, CSHL Course Synthet Biol, Cold Spring Harbor, NY 11724 USA Cornell Univ, Sch Chem & Biomol Engn, Ithaca, NY 14850 USA

Chappell, James
论文数: 0 引用数: 0
h-index: 0
机构:
Cornell Univ, Sch Chem & Biomol Engn, Ithaca, NY 14850 USA Cornell Univ, Sch Chem & Biomol Engn, Ithaca, NY 14850 USA

Hayes, Clarmyra A.
论文数: 0 引用数: 0
h-index: 0
机构:
CALTECH, Div Biol & Biol Engn, Pasadena, CA 91125 USA Cornell Univ, Sch Chem & Biomol Engn, Ithaca, NY 14850 USA

Sun, Zachary Z.
论文数: 0 引用数: 0
h-index: 0
机构:
CALTECH, Div Biol & Biol Engn, Pasadena, CA 91125 USA Cornell Univ, Sch Chem & Biomol Engn, Ithaca, NY 14850 USA

Kim, Jongmin
论文数: 0 引用数: 0
h-index: 0
机构:
CALTECH, Div Biol & Biol Engn, Pasadena, CA 91125 USA Cornell Univ, Sch Chem & Biomol Engn, Ithaca, NY 14850 USA

Singhal, Vipul
论文数: 0 引用数: 0
h-index: 0
机构:
Cold Spring Harbor Lab, CSHL Course Synthet Biol, Cold Spring Harbor, NY 11724 USA
CALTECH, Div Biol & Biol Engn, Pasadena, CA 91125 USA Cornell Univ, Sch Chem & Biomol Engn, Ithaca, NY 14850 USA

Spring, Kevin J.
论文数: 0 引用数: 0
h-index: 0
机构:
Cold Spring Harbor Lab, CSHL Course Synthet Biol, Cold Spring Harbor, NY 11724 USA
Univ Texas Med Sch Houston, Dept Integrat Biol & Pharmacol, Houston, TX 77030 USA Cornell Univ, Sch Chem & Biomol Engn, Ithaca, NY 14850 USA

Al-Khabouri, Shaima
论文数: 0 引用数: 0
h-index: 0
机构:
Cold Spring Harbor Lab, CSHL Course Synthet Biol, Cold Spring Harbor, NY 11724 USA
Univ Montreal, IRIC, Montreal, PQ H3T 1J4, Canada Cornell Univ, Sch Chem & Biomol Engn, Ithaca, NY 14850 USA

Fall, Christopher P.
论文数: 0 引用数: 0
h-index: 0
机构:
Cold Spring Harbor Lab, CSHL Course Synthet Biol, Cold Spring Harbor, NY 11724 USA
Univ Illinois, Dept Bioengn, Chicago, IL 60607 USA
Georgetown Univ, Dept Comp Sci, Washington, DC 20057 USA Cornell Univ, Sch Chem & Biomol Engn, Ithaca, NY 14850 USA

Noireaux, Vincent
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Minnesota, Sch Phys & Astron, Minneapolis, MN 55455 USA Cornell Univ, Sch Chem & Biomol Engn, Ithaca, NY 14850 USA

Murray, Richard M.
论文数: 0 引用数: 0
h-index: 0
机构:
Cold Spring Harbor Lab, CSHL Course Synthet Biol, Cold Spring Harbor, NY 11724 USA
CALTECH, Div Biol & Biol Engn, Pasadena, CA 91125 USA Cornell Univ, Sch Chem & Biomol Engn, Ithaca, NY 14850 USA

Lucks, Julius B.
论文数: 0 引用数: 0
h-index: 0
机构:
Cornell Univ, Sch Chem & Biomol Engn, Ithaca, NY 14850 USA
Cold Spring Harbor Lab, CSHL Course Synthet Biol, Cold Spring Harbor, NY 11724 USA Cornell Univ, Sch Chem & Biomol Engn, Ithaca, NY 14850 USA
[63]
In vitro gene expression within membrane-free coacervate protocells
[J].
Tang, T. -Y. Dora
;
van Swaay, Dirk
;
deMello, Andrew
;
Anderson, J. L. Ross
;
Mann, Stephen
.
CHEMICAL COMMUNICATIONS,
2015, 51 (57)
:11429-11432

Tang, T. -Y. Dora
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Bristol, Sch Chem, Ctr Protolife Res, Bristol BS8 1TS, Avon, England Univ Bristol, Sch Chem, Ctr Protolife Res, Bristol BS8 1TS, Avon, England

van Swaay, Dirk
论文数: 0 引用数: 0
h-index: 0
机构:
ETH, Inst Chem & Bioengn, CH-8093 Zurich, Switzerland Univ Bristol, Sch Chem, Ctr Protolife Res, Bristol BS8 1TS, Avon, England

deMello, Andrew
论文数: 0 引用数: 0
h-index: 0
机构:
ETH, Inst Chem & Bioengn, CH-8093 Zurich, Switzerland Univ Bristol, Sch Chem, Ctr Protolife Res, Bristol BS8 1TS, Avon, England

Anderson, J. L. Ross
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Bristol, Sch Biochem, Bristol BS8 1TD, Avon, England Univ Bristol, Sch Chem, Ctr Protolife Res, Bristol BS8 1TS, Avon, England

Mann, Stephen
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Bristol, Sch Chem, Ctr Protolife Res, Bristol BS8 1TS, Avon, England Univ Bristol, Sch Chem, Ctr Protolife Res, Bristol BS8 1TS, Avon, England
[64]
Synchrony and pattern formation of coupled genetic oscillators on a chip of artificial cells
[J].
Tayar, Alexandra M.
;
Karzbrun, Eyal
;
Noireaux, Vincent
;
Bar-Ziv, Roy H.
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2017, 114 (44)
:11609-11614

Tayar, Alexandra M.
论文数: 0 引用数: 0
h-index: 0
机构:
Weizmann Inst Sci, Dept Mat & Interfaces, IL-76100 Rehovot, Israel Weizmann Inst Sci, Dept Mat & Interfaces, IL-76100 Rehovot, Israel

论文数: 引用数:
h-index:
机构:

Noireaux, Vincent
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Minnesota, Sch Phys & Astron, Minneapolis, MN 55455 USA Weizmann Inst Sci, Dept Mat & Interfaces, IL-76100 Rehovot, Israel

Bar-Ziv, Roy H.
论文数: 0 引用数: 0
h-index: 0
机构:
Weizmann Inst Sci, Dept Mat & Interfaces, IL-76100 Rehovot, Israel Weizmann Inst Sci, Dept Mat & Interfaces, IL-76100 Rehovot, Israel
[65]
Propagating gene expression fronts in a one-dimensional coupled system of artificial cells
[J].
Tayar, Alexandra M.
;
Karzbrun, Eyal
;
Noireaux, Vincent
;
Bar-Ziv, Roy H.
.
NATURE PHYSICS,
2015, 11 (12)
:1037-+

Tayar, Alexandra M.
论文数: 0 引用数: 0
h-index: 0
机构:
Weizmann Inst Sci, Dept Mat & Interfaces, IL-76100 Rehovot, Israel Weizmann Inst Sci, Dept Mat & Interfaces, IL-76100 Rehovot, Israel

论文数: 引用数:
h-index:
机构:

Noireaux, Vincent
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Minnesota, Dept Phys, Minneapolis, MN 55455 USA Weizmann Inst Sci, Dept Mat & Interfaces, IL-76100 Rehovot, Israel

Bar-Ziv, Roy H.
论文数: 0 引用数: 0
h-index: 0
机构:
Weizmann Inst Sci, Dept Mat & Interfaces, IL-76100 Rehovot, Israel Weizmann Inst Sci, Dept Mat & Interfaces, IL-76100 Rehovot, Israel
[66]
Toward Microfluidic Reactors for Cell-Free Protein Synthesis at the Point-of-Care
[J].
Timm, Andrea C.
;
Shankles, Peter G.
;
Foster, Carmen M.
;
Doktycz, Mitchel J.
;
Retterer, Scott T.
.
SMALL,
2016, 12 (06)
:810-817

Timm, Andrea C.
论文数: 0 引用数: 0
h-index: 0
机构:
Oak Ridge Natl Lab, 1 Bethel Valley Rd, Oak Ridge, TN 37831 USA Oak Ridge Natl Lab, 1 Bethel Valley Rd, Oak Ridge, TN 37831 USA

Shankles, Peter G.
论文数: 0 引用数: 0
h-index: 0
机构:
Oak Ridge Natl Lab, 1 Bethel Valley Rd, Oak Ridge, TN 37831 USA
Univ Tennessee, Knoxville, TN 37996 USA Oak Ridge Natl Lab, 1 Bethel Valley Rd, Oak Ridge, TN 37831 USA

Foster, Carmen M.
论文数: 0 引用数: 0
h-index: 0
机构:
Oak Ridge Natl Lab, 1 Bethel Valley Rd, Oak Ridge, TN 37831 USA Oak Ridge Natl Lab, 1 Bethel Valley Rd, Oak Ridge, TN 37831 USA

Doktycz, Mitchel J.
论文数: 0 引用数: 0
h-index: 0
机构:
Oak Ridge Natl Lab, 1 Bethel Valley Rd, Oak Ridge, TN 37831 USA
Univ Tennessee, Knoxville, TN 37996 USA Oak Ridge Natl Lab, 1 Bethel Valley Rd, Oak Ridge, TN 37831 USA

Retterer, Scott T.
论文数: 0 引用数: 0
h-index: 0
机构:
Oak Ridge Natl Lab, 1 Bethel Valley Rd, Oak Ridge, TN 37831 USA
Univ Tennessee, Knoxville, TN 37996 USA Oak Ridge Natl Lab, 1 Bethel Valley Rd, Oak Ridge, TN 37831 USA
[67]
On-chip membrane protein cell-free expression enables development of a direct binding assay: A curious case of potassium channel KcsA-Kv1.3
[J].
Vaish, Arnit
;
Guo, Shaobin
;
Murray, Richard M.
;
Grandsard, Peter J.
;
Chen, Qing
.
ANALYTICAL BIOCHEMISTRY,
2018, 556
:70-77

Vaish, Arnit
论文数: 0 引用数: 0
h-index: 0
机构:
Amgen Inc, Discovery Res, Discovery Attribute Sci, Thousand Oaks, CA 91320 USA Amgen Inc, Discovery Res, Discovery Attribute Sci, Thousand Oaks, CA 91320 USA

Guo, Shaobin
论文数: 0 引用数: 0
h-index: 0
机构:
CALTECH, Biochem & Mol Biophys, Pasadena, CA 91125 USA Amgen Inc, Discovery Res, Discovery Attribute Sci, Thousand Oaks, CA 91320 USA

Murray, Richard M.
论文数: 0 引用数: 0
h-index: 0
机构:
CALTECH, Biochem & Mol Biophys, Pasadena, CA 91125 USA
CALTECH, Control & Dynam Syst, Pasadena, CA 91125 USA Amgen Inc, Discovery Res, Discovery Attribute Sci, Thousand Oaks, CA 91320 USA

Grandsard, Peter J.
论文数: 0 引用数: 0
h-index: 0
机构:
Amgen Inc, Discovery Res, Discovery Attribute Sci, Thousand Oaks, CA 91320 USA Amgen Inc, Discovery Res, Discovery Attribute Sci, Thousand Oaks, CA 91320 USA

Chen, Qing
论文数: 0 引用数: 0
h-index: 0
机构:
Amgen Inc, Discovery Res, Discovery Attribute Sci, Thousand Oaks, CA 91320 USA Amgen Inc, Discovery Res, Discovery Attribute Sci, Thousand Oaks, CA 91320 USA
[68]
Self-replication of DNA by its encoded proteins in liposome-based synthetic cells
[J].
van Nies, Pauline
;
Westerlaken, Ilja
;
Blanken, Duco
;
Salas, Margarita
;
Mencia, Mario
;
Danelon, Christophe
.
NATURE COMMUNICATIONS,
2018, 9

van Nies, Pauline
论文数: 0 引用数: 0
h-index: 0
机构:
Delft Univ Technol, Kavli Inst Nanosci, Dept Bionanosci, van der Maasweg 9, NL-2629 HZ Delft, Netherlands Delft Univ Technol, Kavli Inst Nanosci, Dept Bionanosci, van der Maasweg 9, NL-2629 HZ Delft, Netherlands

Westerlaken, Ilja
论文数: 0 引用数: 0
h-index: 0
机构:
Delft Univ Technol, Kavli Inst Nanosci, Dept Bionanosci, van der Maasweg 9, NL-2629 HZ Delft, Netherlands Delft Univ Technol, Kavli Inst Nanosci, Dept Bionanosci, van der Maasweg 9, NL-2629 HZ Delft, Netherlands

Blanken, Duco
论文数: 0 引用数: 0
h-index: 0
机构:
Delft Univ Technol, Kavli Inst Nanosci, Dept Bionanosci, van der Maasweg 9, NL-2629 HZ Delft, Netherlands Delft Univ Technol, Kavli Inst Nanosci, Dept Bionanosci, van der Maasweg 9, NL-2629 HZ Delft, Netherlands

Salas, Margarita
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Autonoma Madrid, Ctr Biol Mol Severo Ochoa CSIC UAM, E-28049 Madrid, Spain Delft Univ Technol, Kavli Inst Nanosci, Dept Bionanosci, van der Maasweg 9, NL-2629 HZ Delft, Netherlands

Mencia, Mario
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Autonoma Madrid, Ctr Biol Mol Severo Ochoa CSIC UAM, E-28049 Madrid, Spain Delft Univ Technol, Kavli Inst Nanosci, Dept Bionanosci, van der Maasweg 9, NL-2629 HZ Delft, Netherlands

Danelon, Christophe
论文数: 0 引用数: 0
h-index: 0
机构:
Delft Univ Technol, Kavli Inst Nanosci, Dept Bionanosci, van der Maasweg 9, NL-2629 HZ Delft, Netherlands Delft Univ Technol, Kavli Inst Nanosci, Dept Bionanosci, van der Maasweg 9, NL-2629 HZ Delft, Netherlands
[69]
Cell-free production of trimeric influenza hemagglutinin head domain proteins as vaccine antigens
[J].
Welsh, John P.
;
Lu, Yuan
;
He, Xiao-Song
;
Greenberg, Harry B.
;
Swartz, James R.
.
BIOTECHNOLOGY AND BIOENGINEERING,
2012, 109 (12)
:2962-2969

Welsh, John P.
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Chem Engn, Stanford, CA 94305 USA Stanford Univ, Dept Chem Engn, Stanford, CA 94305 USA

Lu, Yuan
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Chem Engn, Stanford, CA 94305 USA Stanford Univ, Dept Chem Engn, Stanford, CA 94305 USA

He, Xiao-Song
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Med, Stanford, CA 94305 USA
Stanford Univ, Dept Microbiol & Immunol, Stanford, CA 94305 USA
VA Palo Alto Hlth Care Syst, Palo Alto, CA 94304 USA Stanford Univ, Dept Chem Engn, Stanford, CA 94305 USA

Greenberg, Harry B.
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Med, Stanford, CA 94305 USA
Stanford Univ, Dept Microbiol & Immunol, Stanford, CA 94305 USA
VA Palo Alto Hlth Care Syst, Palo Alto, CA 94304 USA Stanford Univ, Dept Chem Engn, Stanford, CA 94305 USA

Swartz, James R.
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Chem Engn, Stanford, CA 94305 USA
Stanford Univ, Dept Bioengn, Stanford, CA 94305 USA Stanford Univ, Dept Chem Engn, Stanford, CA 94305 USA
[70]
Production of bispecific antibodies in "knobs-into-holes" using a cell-free expression system
[J].
Xu, Yiren
;
Lee, John
;
Cuong Tran
;
Heibeck, Tyler H.
;
Wang, Willie D.
;
Yang, Junhao
;
Stafford, Ryan L.
;
Steiner, Alexander R.
;
Sato, Aaron K.
;
Hallam, Trevor J.
;
Yin, Gang
.
MABS,
2015, 7 (01)
:231-242

Xu, Yiren
论文数: 0 引用数: 0
h-index: 0
机构:
Sutro Biopharma Inc, San Francisco, CA 94080 USA Sutro Biopharma Inc, San Francisco, CA 94080 USA

Lee, John
论文数: 0 引用数: 0
h-index: 0
机构:
Sutro Biopharma Inc, San Francisco, CA 94080 USA Sutro Biopharma Inc, San Francisco, CA 94080 USA

Cuong Tran
论文数: 0 引用数: 0
h-index: 0
机构:
Sutro Biopharma Inc, San Francisco, CA 94080 USA Sutro Biopharma Inc, San Francisco, CA 94080 USA

Heibeck, Tyler H.
论文数: 0 引用数: 0
h-index: 0
机构:
Sutro Biopharma Inc, San Francisco, CA 94080 USA Sutro Biopharma Inc, San Francisco, CA 94080 USA

Wang, Willie D.
论文数: 0 引用数: 0
h-index: 0
机构:
Sutro Biopharma Inc, San Francisco, CA 94080 USA Sutro Biopharma Inc, San Francisco, CA 94080 USA

Yang, Junhao
论文数: 0 引用数: 0
h-index: 0
机构:
Sutro Biopharma Inc, San Francisco, CA 94080 USA Sutro Biopharma Inc, San Francisco, CA 94080 USA

Stafford, Ryan L.
论文数: 0 引用数: 0
h-index: 0
机构:
Sutro Biopharma Inc, San Francisco, CA 94080 USA Sutro Biopharma Inc, San Francisco, CA 94080 USA

Steiner, Alexander R.
论文数: 0 引用数: 0
h-index: 0
机构:
Sutro Biopharma Inc, San Francisco, CA 94080 USA Sutro Biopharma Inc, San Francisco, CA 94080 USA

Sato, Aaron K.
论文数: 0 引用数: 0
h-index: 0
机构:
Sutro Biopharma Inc, San Francisco, CA 94080 USA Sutro Biopharma Inc, San Francisco, CA 94080 USA

Hallam, Trevor J.
论文数: 0 引用数: 0
h-index: 0
机构:
Sutro Biopharma Inc, San Francisco, CA 94080 USA Sutro Biopharma Inc, San Francisco, CA 94080 USA

Yin, Gang
论文数: 0 引用数: 0
h-index: 0
机构:
Sutro Biopharma Inc, San Francisco, CA 94080 USA Sutro Biopharma Inc, San Francisco, CA 94080 USA