Cell-free transcription-translation: engineering biology from the nanometer to the millimeter scale

被引:58
作者
Garenne, David [1 ]
Noireaux, Vincent [1 ]
机构
[1] Univ Minnesota, Phys & Nanotechnol, 115 Union St SE, Minneapolis, MN 55455 USA
关键词
FREE PROTEIN-SYNTHESIS; MEMBRANE-PROTEIN; GENE-EXPRESSION; SYNTHETIC BIOLOGY; SYSTEM; EVOLUTION; IMPACT; CHIP;
D O I
10.1016/j.copbio.2018.10.007
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Cell-free transcription-translation (TXTL) has become a highly versatile technology to construct, characterize and interrogate genetically programmed biomolecular systems implemented outside living organisms. By recapitulating gene expression in vitro, TXTL offers unparalleled flexibility to take apart, engineer and analyze quantitatively the effects of chemical, physical and genetic contexts on the function of biochemical systems, from simple regulatory elements to millimeter-scale pattern formation. Here, we review the capabilities of the current cell-free platforms for executing DNA programs in vitro. We describe the recent advances in programming using cell-free expression, a multidisciplinary playground that has enabled a myriad of novel applications in synthetic biology, biotechnology, and biological physics. Finally, we discuss the challenges and perspectives in the research area of TXTL-based constructive biology.
引用
收藏
页码:19 / 27
页数:9
相关论文
共 73 条
[51]   Cell free protein synthesis: a viable option for stratified medicines manufacturing? [J].
Ogonah, Olotu W. ;
Polizzi, Karen M. ;
Bracewell, Daniel G. .
CURRENT OPINION IN CHEMICAL ENGINEERING, 2017, 18 :77-83
[52]   Portable, On-Demand Biomolecular Manufacturing [J].
Pardee, Keith ;
Slomovic, Shimyn ;
Nguyen, Peter Q. ;
Lee, Jeong Wook ;
Donghia, Nina ;
Burrill, Devin ;
Ferrante, Tom ;
McSorley, Fern R. ;
Furuta, Yoshikazu ;
Vernet, Andyna ;
Lewandowski, Michael ;
Boddy, Christopher N. ;
Joshi, Neel S. ;
Collins, James J. .
CELL, 2016, 167 (01) :248-+
[53]   Rapid, Low-Cost Detection of Zika Virus Using Programmable Biomolecular Components [J].
Pardee, Keith ;
Green, Alexander A. ;
Takahashi, Melissa K. ;
Braff, Dana ;
Lambert, Guillaume ;
Lee, Jeong Wook ;
Ferrante, Tom ;
Ma, Duo ;
Donghia, Nina ;
Fan, Melina ;
Daringer, Nichole M. ;
Bosch, Irene ;
Dudley, Dawn M. ;
O'Connor, David H. ;
Gehrke, Lee ;
Collins, James J. .
CELL, 2016, 165 (05) :1255-1266
[54]   Paper-Based Synthetic Gene Networks [J].
Pardee, Keith ;
Green, Alexander A. ;
Ferrante, Tom ;
Cameron, D. Ewen ;
DaleyKeyser, Ajay ;
Yin, Peng ;
Collins, James J. .
CELL, 2014, 159 (04) :940-954
[55]   Synthetic cells produce a quorum sensing chemical signal perceived by Pseudomonas aeruginosa [J].
Rampioni, Giordano ;
D'Angelo, Francesca ;
Messina, Marco ;
Zennaro, Alessandro ;
Kuruma, Yutetsu ;
Tofani, Daniela ;
Leoni, Livia ;
Stano, Pasquale .
CHEMICAL COMMUNICATIONS, 2018, 54 (17) :2090-2093
[56]  
Rues RB, 2017, METHODS MOL BIOL, V1586, P291, DOI 10.1007/978-1-4939-6887-9_19
[57]   Optimized Assembly of a Multifunctional RNA-Protein Nanostructure in a Cell-Free Gene Expression System [J].
Schwarz-Schilling, Matthaeus ;
Dupin, Aurore ;
Chizzolini, Fabio ;
Krishnan, Swati ;
Mansy, Sheref S. ;
Simmel, Friedrich C. .
NANO LETTERS, 2018, 18 (04) :2650-2657
[58]   Design of a Toolbox of RNA Thermometers [J].
Sen, Shaunak ;
Apurva, Divyansh ;
Satija, Rohit ;
Siegal, Dan ;
Murray, Richard M. .
ACS SYNTHETIC BIOLOGY, 2017, 6 (08) :1461-1470
[59]   Cell-free protein synthesis of norovirus virus-like particles [J].
Sheng, Jiayuan ;
Lei, Shaohua ;
Yuan, Lijuan ;
Feng, Xueyang .
RSC ADVANCES, 2017, 7 (46) :28837-28840
[60]   Genome Replication, Synthesis, and Assembly of the Bacteriophage T7 in a Single Cell-Free Reaction [J].
Shin, Jonghyeon ;
Jardine, Paul ;
Noireaux, Vincent .
ACS SYNTHETIC BIOLOGY, 2012, 1 (09) :408-413