Amphipathic environments for determining the structure of membrane proteins by single-particle electron cryo-microscopy

被引:22
作者
Le Bon, Christel [1 ,2 ]
Michon, Baptiste [1 ,2 ]
Popot, Jean-Luc [1 ,2 ]
Zoonens, Manuela [1 ,2 ]
机构
[1] Univ Paris, Lab Biol Physicochim Prot Membranaires, CNRS, UMR 7099, F-75005 Paris, France
[2] Fdn Edmond de Rothschild Dev Rech Sci, Inst Biol Physicochim, F-75005 Paris, France
关键词
amphipols; detergents; integral membrane protein complexes; lipids; nanodiscs; structural biology; CRYO-EM STRUCTURE; MOLECULAR-DYNAMICS SIMULATIONS; RESONANCE ENERGY-TRANSFER; ESCHERICHIA-COLI; GRID PREPARATION; COMPLEX; MICROSCOPY; AMPHIPOLS; CHANNEL; ACTIVATION;
D O I
10.1017/S0033583521000044
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
Over the past decade, the structural biology of membrane proteins (MPs) has taken a new turn thanks to epoch-making technical progress in single-particle electron cryo-microscopy (cryo-EM) as well as to improvements in sample preparation. The present analysis provides an overview of the extent and modes of usage of the various types of surfactants for cryo-EM studies. Digitonin, dodecylmaltoside, protein-based nanodiscs, lauryl maltoside-neopentyl glycol, glyco-diosgenin, and amphipols (APols) are the most popular surfactants at the vitrification step. Surfactant exchange is frequently used between MP purification and grid preparation, requiring extensive optimization each time the study of a new MP is undertaken. The variety of both the surfactants and experimental approaches used over the past few years bears witness to the need to continue developing innovative surfactants and optimizing conditions for sample preparation. The possibilities offered by novel APols for EM applications are discussed.
引用
收藏
页数:22
相关论文
共 254 条
  • [51] Denisov IG, 2019, METHODS MOL BIOL, V2003, P645, DOI 10.1007/978-1-4939-9512-7_25
  • [52] Nanodiscs in Membrane Biochemistry and Biophysics
    Denisov, Ilia G.
    Sligari, Stephen G.
    [J]. CHEMICAL REVIEWS, 2017, 117 (06) : 4669 - 4713
  • [53] Structural insight into mitochondrial β-barrel outer membrane protein biogenesis
    Diederichs, Kathryn A.
    Ni, Xiaodan
    Rollauer, Sarah E.
    Botos, Istvan
    Tan, Xiaofeng
    King, Martin S.
    Kunji, Edmund R. S.
    Jiang, Jiansen
    Buchanan, Susan K.
    [J]. NATURE COMMUNICATIONS, 2020, 11 (01)
  • [54] Microbial expression systems for membrane proteins
    Dilworth, Marvin V.
    Piel, Mathilde S.
    Bettaney, Kim E.
    Ma, Pikyee
    Luo, Ji
    Sharples, David
    Poyner, David R.
    Gross, Stephane R.
    Moncoq, Karine
    Henderson, Peter J. F.
    Miroux, Bruno
    Bill, Roslyn M.
    [J]. METHODS, 2018, 147 : 3 - 39
  • [55] PLUNGE FREEZING FOR ELECTRON CRYOMICROSCOPY
    Dobro, Megan J.
    Melanson, Linda A.
    Jensen, Grant J.
    McDowall, Alasdair W.
    [J]. METHODS IN ENZYMOLOGY, VOL 481: CRYO-EM, PART A - SAMPLE PREPARATION AND DATA COLLECTION, 2010, 481 : 63 - 82
  • [56] Structure of the adenosine-bound human adenosine A1 receptor-Gi complex
    Draper-Joyce, Christopher J.
    Khoshouei, Maryam
    Thal, David M.
    Liang, Yi-Lynn
    Nguyen, Anh T. N.
    Furness, Sebastian G. B.
    Venugopal, Hariprasad
    Baltos, Jo-Anne
    Plitzko, Juergen M.
    Danev, Radostin
    Baumeister, Wolfgang
    May, Lauren T.
    Wootten, Denise
    Sexton, Patrick M.
    Glukhova, Alisa
    Christopoulos, Arthur
    [J]. NATURE, 2018, 558 (7711) : 559 - +
  • [57] Approaches to altering particle distributions in cryo-electron microscopy sample preparation
    Drulyte, Ieva
    Johnson, Rachel M.
    Hesketh, Emma L.
    Hurdiss, Daniel L.
    Scarff, Charlotte A.
    Porav, Sebastian A.
    Ranson, Neil A.
    Muench, Stephen P.
    Thompson, Rebecca F.
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2018, 74 : 560 - 571
  • [58] Structural basis of Ca2+-dependent activation and lipid transport by a TMEM16 scramblase
    Falzone, Maria E.
    Rheinberger, Jan
    Lee, Byoung-Cheol
    Peyear, Thasin
    Sasset, Linda
    Raczkowski, Ashleigh M.
    Eng, Edward T.
    Di Lorenzo, Annarita
    Andersen, Olaf S.
    Nimigean, Crina M.
    Accardi, Alessio
    [J]. ELIFE, 2019, 8
  • [59] Ball-and-chain inactivation in a calcium-gated potassium channel
    Fan, Chen
    Sukomon, Nattakan
    Flood, Emelie
    Rheinberger, Jan
    Allen, Toby W.
    Nimigean, Crina M.
    [J]. NATURE, 2020, 580 (7802) : 288 - +
  • [60] Cryo-EM Studies of TMEM16F Calcium-Activated Ion Channel Suggest Features Important for Lipid Scrambling
    Feng, Shengjie
    Dang, Shangyu
    Han, Tina Wei
    Ye, Wenlei
    Jin, Peng
    Cheng, Tong
    Li, Junrui
    Jan, Yuh Nung
    Jan, Lily Yeh
    Cheng, Yifan
    [J]. CELL REPORTS, 2019, 28 (02): : 567 - +