Amphipathic environments for determining the structure of membrane proteins by single-particle electron cryo-microscopy

被引:22
作者
Le Bon, Christel [1 ,2 ]
Michon, Baptiste [1 ,2 ]
Popot, Jean-Luc [1 ,2 ]
Zoonens, Manuela [1 ,2 ]
机构
[1] Univ Paris, Lab Biol Physicochim Prot Membranaires, CNRS, UMR 7099, F-75005 Paris, France
[2] Fdn Edmond de Rothschild Dev Rech Sci, Inst Biol Physicochim, F-75005 Paris, France
关键词
amphipols; detergents; integral membrane protein complexes; lipids; nanodiscs; structural biology; CRYO-EM STRUCTURE; MOLECULAR-DYNAMICS SIMULATIONS; RESONANCE ENERGY-TRANSFER; ESCHERICHIA-COLI; GRID PREPARATION; COMPLEX; MICROSCOPY; AMPHIPOLS; CHANNEL; ACTIVATION;
D O I
10.1017/S0033583521000044
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
Over the past decade, the structural biology of membrane proteins (MPs) has taken a new turn thanks to epoch-making technical progress in single-particle electron cryo-microscopy (cryo-EM) as well as to improvements in sample preparation. The present analysis provides an overview of the extent and modes of usage of the various types of surfactants for cryo-EM studies. Digitonin, dodecylmaltoside, protein-based nanodiscs, lauryl maltoside-neopentyl glycol, glyco-diosgenin, and amphipols (APols) are the most popular surfactants at the vitrification step. Surfactant exchange is frequently used between MP purification and grid preparation, requiring extensive optimization each time the study of a new MP is undertaken. The variety of both the surfactants and experimental approaches used over the past few years bears witness to the need to continue developing innovative surfactants and optimizing conditions for sample preparation. The possibilities offered by novel APols for EM applications are discussed.
引用
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页数:22
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共 254 条
  • [41] Influence of solubilizing environments on membrane protein structures
    Cross, Timothy A.
    Sharma, Mukesh
    Yi, Myunggi
    Zhou, Huan-Xiang
    [J]. TRENDS IN BIOCHEMICAL SCIENCES, 2011, 36 (02) : 117 - 125
  • [42] Protein denaturation at the air-water interface and how to prevent it
    D'Imprima, Edoardo
    Floris, Davide
    Joppe, Mirko
    Sanchez, Ricardo
    Grininger, Martin
    Kuehlbrandt, Werner
    [J]. ELIFE, 2019, 8
  • [43] Cryo-EM structures of the TMEM16A calcium-activated chloride channel
    Dang, Shangyu
    Feng, Shengjie
    Tien, Jason
    Peters, Christian J.
    Bulkley, David
    Lolicato, Marco
    Zhao, Jianhua
    Zuberbuhler, Kathrin
    Ye, Wenlei
    Qi, Lijun
    Chen, Tingxu
    Craik, Charles S.
    Jan, Yuh Nung
    Minor, Daniel L., Jr.
    Cheng, Yifan
    Jan, Lily Yeh
    [J]. NATURE, 2017, 552 (7685) : 426 - +
  • [44] Single-particle electron microscopy in the study of membrane protein structure
    De Zorzi, Rita
    Mi, Wei
    Liao, Maofu
    Walz, Thomas
    [J]. MICROSCOPY, 2016, 65 (01) : 81 - 96
  • [45] STRUCTURE OF THE PROTEIN SUBUNITS IN THE PHOTOSYNTHETIC REACTION CENTER OF RHODOPSEUDOMONAS-VIRIDIS AT 3A RESOLUTION
    DEISENHOFER, J
    EPP, O
    MIKI, K
    HUBER, R
    MICHEL, H
    [J]. NATURE, 1985, 318 (6047) : 618 - 624
  • [46] Functionalized Amphipols: A Versatile Toolbox Suitable for Applications of Membrane Proteins in Synthetic Biology
    Della Pia, Eduardo Antonio
    Hansen, Randi Westh
    Zoonens, Manuela
    Martinez, Karen L.
    [J]. JOURNAL OF MEMBRANE BIOLOGY, 2014, 247 (9-10) : 815 - 826
  • [47] A Step Closer to Membrane Protein Multiplexed Nanoarrays Using Biotin-Doped Polypyrrole
    Della Pia, Eduardo Antonio
    Holm, Jeppe V.
    Lloret, Noemie
    Le Bon, Christel
    Popot, Jean-Luc
    Zoonens, Manuela
    Nygard, Jesper
    Martinez, Karen Laurence
    [J]. ACS NANO, 2014, 8 (02) : 1844 - 1853
  • [48] Structures of the stator complex that drives rotation of the bacterial flagellum
    Deme, Justin C.
    Johnson, Steven
    Vickery, Owen
    Muellbauer, Amy
    Monkhouse, Holly
    Griffiths, Thomas
    James, Rory Hennell
    Berks, Ben C.
    Coulton, James W.
    Stansfeld, Phillip J.
    Lea, Susan M.
    [J]. NATURE MICROBIOLOGY, 2020, 5 (12) : 1553 - +
  • [49] Structural mechanism for gating of a eukaryotic mechanosensitive channel of small conductance
    Deng, Zengqin
    Maksaev, Grigory
    Schlegel, Angela M.
    Zhang, Jingying
    Rau, Michael
    Fitzpatrick, James A. J.
    Haswell, Elizabeth S.
    Yuan, Peng
    [J]. NATURE COMMUNICATIONS, 2020, 11 (01)
  • [50] Directed self-assembly of monodisperse phospholipid bilayer nanodiscs with controlled size
    Denisov, IG
    Grinkova, YV
    Lazarides, AA
    Sligar, SG
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (11) : 3477 - 3487