Complete chloroplast genome sequence of Salix sinopurpurea (Salicaceae)

被引：4
作者：
Guo, Feiyi [1 ]
Liu, Kangjia [1 ]
Wang, Yachao [1 ]
Li, Enze [1 ]
Zhan, Zhenfeng [1 ]
Zhang, Zhixiang [1 ,2 ]
机构：
[1] Beijing Forestry Univ, Sch Ecol & Nat Conservat, Beijing, Peoples R China
[2] Beijing Forestry Univ, Museum Beijing Forestry Univ, Beijing, Peoples R China
来源：
MITOCHONDRIAL DNA PART B-RESOURCES | 2021年 / 6卷 / 03期
关键词：
Salix sinopurpurea; complete chloroplast genome; phylogeny;
D O I：
10.1080/23802359.2020.1858726
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
Salix sinopurpurea is a morphologically special shrubby willow characterizing opposite leaves. Here, we reported the complete chloroplast (cp) genome sequence of Salix sinopurpurea. The cp genome is 155,546 bp in length, including a large single-copy (LSC) region of 84,412 bp, a small single-copy (SSC) region of 16,216 bp, and a pair of inverted repeated regions of 27,459 bp. The cp genome of Salix sinopurpurea encodes 130 genes, including 85 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic tree showed that Salix sinopurpurea is closely related to Salix psammophila and Salix suchowensis.
引用
收藏
页码：718 / 719
页数：2
相关论文
共 7 条
  • [1] Doyle JJ., 1987, PHYTOCHEMISTRY B, V19, P11, DOI [DOI 10.2307/4119796, DOI 10.1016/0031-9422(80)85004-7]
  • [2] Structural variation of the complete chloroplast genome and plastid phylogenomics of the genus Asteropyrum (Ranunculaceae)
    He, Jian
    Yao, Min
    Lyu, Ru-Dan
    Lin, Le-Le
    Liu, Hui-Jie
    Pei, Lin-Ying
    Yan, Shuang-Xi
    Xie, Lei
    Cheng, Jin
    [J]. SCIENTIFIC REPORTS, 2019, 9 (1)
  • [3] PLANN: A COMMAND-LINE APPLICATION FOR ANNOTATING PLASTOME SEQUENCES
    Huang, Daisie I.
    Cronk, Quentin C. B.
    [J]. APPLICATIONS IN PLANT SCIENCES, 2015, 3 (08):
  • [4] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
    Katoh, Kazutaka
    Standley, Daron M.
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) : 772 - 780
  • [5] Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
    Kearse, Matthew
    Moir, Richard
    Wilson, Amy
    Stones-Havas, Steven
    Cheung, Matthew
    Sturrock, Shane
    Buxton, Simon
    Cooper, Alex
    Markowitz, Sidney
    Duran, Chris
    Thierer, Tobias
    Ashton, Bruce
    Meintjes, Peter
    Drummond, Alexei
    [J]. BIOINFORMATICS, 2012, 28 (12) : 1647 - 1649
  • [6] IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
    Lam-Tung Nguyen
    Schmidt, Heiko A.
    von Haeseler, Arndt
    Bui Quang Minh
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2015, 32 (01) : 268 - 274
  • [7] PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes
    Qu, Xiao-Jian
    Moore, Michael J.
    Li, De-Zhu
    Yi, Ting-Shuang
    [J]. PLANT METHODS, 2019, 15 (1)
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