Determination of a complex crystal structure in the absence of single crystals: analysis of powder X-ray diffraction data, guided by solid-state NMR and periodic DFT calculations, reveals a new 2′-deoxyguanosine structural motif

被引:68
作者
Hughes, Colan E. [1 ]
Reddy, G. N. Manjunatha [2 ]
Masiero, Stefano [3 ]
Brown, Steven P. [2 ]
Williams, P. Andrew [1 ]
Harris, Kenneth D. M. [1 ]
机构
[1] Cardiff Univ, Sch Chem, Pk Pl, Cardiff CF10 3AT, S Glam, Wales
[2] Univ Warwick, Dept Phys, Coventry CV4 7AL, W Midlands, England
[3] Univ Bologna, Alma Mater Studiorum, Dipartimento Chim G Ciamician, Via San Giacomo 11, I-40126 Bologna, Italy
基金
英国工程与自然科学研究理事会;
关键词
SPACE STRUCTURE DETERMINATION; NUCLEAR-MAGNETIC-RESONANCE; HYDROGEN-BOND PATTERNS; GENETIC ALGORITHM; LIPOPHILIC DEOXYGUANOSINE; G-QUARTETS; MAS NMR; GUANOSINE; CRYSTALLOGRAPHY; SPECTROSCOPY;
D O I
10.1039/c7sc00587c
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Derivatives of guanine exhibit diverse supramolecular chemistry, with a variety of distinct hydrogen-bonding motifs reported in the solid state, including ribbons and quartets, which resemble the G-quadruplex found in nucleic acids with sequences rich in guanine. Reflecting this diversity, the solid-state structural properties of 3',5'-bis-O-decanoyl-2'-deoxyguanosine, reported in this paper, reveal a hydrogen-bonded guanine ribbon motif that has not been observed previously for 2'-deoxyguanosine derivatives. In this case, structure determination was carried out directly from powder XRD data, representing one of the most challenging organic molecular structures (a 90-atom molecule) that has been solved to date by this technique. While specific challenges were encountered in the structure determination process, a successful outcome was achieved by augmenting the powder XRD analysis with information derived from solid-state NMR data and with dispersion-corrected periodic DFT calculations for structure optimization. The synergy of experimental and computational methodologies demonstrated in the present work is likely to be an essential feature of strategies to further expand the application of powder XRD as a technique for structure determination of organic molecular materials of even greater complexity in the future.
引用
收藏
页码:3971 / 3979
页数:9
相关论文
共 88 条
[1]   Challenges in direct-space structure determination from powder diffraction data:: A molecular material with four independent molecules in the asymmetric unit [J].
Albesa-Jové, D ;
Kariuki, BM ;
Kitchin, SJ ;
Grice, L ;
Cheung, EY ;
Harris, KDM .
CHEMPHYSCHEM, 2004, 5 (03) :414-418
[2]   TABLES OF BOND LENGTHS DETERMINED BY X-RAY AND NEUTRON-DIFFRACTION .1. BOND LENGTHS IN ORGANIC-COMPOUNDS [J].
ALLEN, FH ;
KENNARD, O ;
WATSON, DG ;
BRAMMER, L ;
ORPEN, AG ;
TAYLOR, R .
JOURNAL OF THE CHEMICAL SOCIETY-PERKIN TRANSACTIONS 2, 1987, (12) :S1-S19
[3]  
[Anonymous], NMR CRYSTALLOGRAPHY
[4]  
[Anonymous], STRUCTURE DETERMINAT
[5]   Combining solid-state NMR spectroscopy with first-principles calculations - a guide to NMR crystallography [J].
Ashbrook, Sharon E. ;
McKay, David .
CHEMICAL COMMUNICATIONS, 2016, 52 (45) :7186-7204
[6]   REGIOSELECTIVE COUPLING OF TETRAALKYLAMMONIUM SALTS OF 6-IODO-2-AMINOPURINE TO A CYCLOBUTYL TRIFLATE - EFFICIENT PREPARATION OF HOMOCHIRAL BMS-180,194, A POTENT ANTIVIRAL CARBOCYCLIC NUCLEOSIDE [J].
BISACCHI, GS ;
SINGH, J ;
GODFREY, JD ;
KISSICK, TP ;
MITT, T ;
MALLEY, MF ;
DIMARCO, JD ;
GOUGOUTAS, JZ ;
MUELLER, RH ;
ZAHLER, R .
JOURNAL OF ORGANIC CHEMISTRY, 1995, 60 (09) :2902-2905
[7]   First-Principles Calculation of NMR Parameters Using the Gauge Including Projector Augmented Wave Method: A Chemist's Point of View [J].
Bonhomme, Christian ;
Gervais, Christel ;
Babonneau, Florence ;
Coelho, Cristina ;
Pourpoint, Frederique ;
Azais, Thierry ;
Ashbrook, Sharon E. ;
Griffin, John M. ;
Yates, Jonathan R. ;
Mauri, Francesco ;
Pickard, Chris J. .
CHEMICAL REVIEWS, 2012, 112 (11) :5733-5779
[8]   INDEXING OF POWDER DIFFRACTION PATTERNS FOR LOW-SYMMETRY LATTICES BY THE SUCCESSIVE DICHOTOMY METHOD [J].
BOULTIF, A ;
LOUER, D .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1991, 24 (pt 6) :987-993
[9]   The PAW/GIPAW approach for computing NMR parameters: A new dimension added to NMR study of solids [J].
Charpentier, Thibault .
SOLID STATE NUCLEAR MAGNETIC RESONANCE, 2011, 40 (01) :1-20
[10]   Structure determination from powder diffraction [J].
Chernyshev, VV .
RUSSIAN CHEMICAL BULLETIN, 2001, 50 (12) :2273-2292