J-GFT NMR for precise measurement of mutually correlated nuclear spin-spin couplings

被引:20
作者
Atreya, Hanudatta S.
Garcia, Erwin
Shen, Yang
Szyperski, Thomas [1 ]
机构
[1] SUNY Buffalo, NW Struct Genom Consortium, Buffalo, NY 14260 USA
[2] SUNY Buffalo, NY Consortium Membrane Prot Struct, Dept Chem, Buffalo, NY 14260 USA
关键词
D O I
10.1021/ja066586s
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
G-matrix Fourier transform (GFT) NMR spectroscopy is presented for accurate and precise measurement of chemical shifts and nuclear spin-spin couplings correlated according to spin system. The new approach, named "J-GFT NMR", is based on a largely extended GFT NMR formalism and promises to have a broad impact on projection NMR spectroscopy. Specifically, constant-time J-GFT (6,2)D (HA-CA-CO)-N-HN was implemented for simultaneous measurement of five mutually correlated NMR parameters, that is, N-15 backbone chemical shifts and the four one-bond spin-spin couplings C-13(alpha)-H-1(alpha), C-13(alpha)-C-13', N-15-C-13', and N-15-H-1(Nu). The experiment was applied for measuring residual dipolar couplings (RDCs) in an 8 kDa protein Z-domain aligned with Pf1 phages. Comparison with RDC values extracted from conventional NMR experiments reveals that RDCs are measured with high precision and accuracy, which is attributable to the facts that (i) the use of constant time evolution ensures that signals do not broaden whenever multiple RDCs are jointly measured in a single dimension and (ii) RDCs are multiply encoded in the multiplets arising from the joint sampling. This corresponds to measuring the couplings multiple times in a statistically independent manner. A key feature of J-GFT NMR, i.e., the correlation of couplings according to spin systems without reference to sequential resonance assignments, promises to be particularly valuable for rapid identification of backbone conformation and classification of protein fold families on the basis of statistical analysis of dipolar couplings.
引用
收藏
页码:680 / 692
页数:13
相关论文
共 98 条
[21]   High-resolution iterative frequency identification for NMR as a general strategy for multidimensional data collection [J].
Eghbalnia, HR ;
Bahrami, A ;
Tonelli, M ;
Hallenga, K ;
Markley, JL .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (36) :12528-12536
[22]   Probing structure and functional dynamics of (large) proteins with aromatic rings: L-GFT-TROSY (4,3)D HCCHNMR spectroscopy [J].
Eletsky, A ;
Atreya, HS ;
Liu, GH ;
Szyperski, T .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (42) :14578-14579
[23]  
Ernst R. R., 1990, Principles of Nuclear Magnetic Resonance in One and Two Dimensions
[24]   Magnetic field dependence of residual dipolar couplings measured in dilute liquid crystalline media [J].
Fehér, K ;
Berger, S .
JOURNAL OF MAGNETIC RESONANCE, 2004, 170 (02) :191-198
[25]   Automated resonance assignment of proteins: 6D APSY-NMR [J].
Fiorito, Francesco ;
Hiller, Sebastian ;
Wider, Gerhard ;
Wuthrich, Kurt .
JOURNAL OF BIOMOLECULAR NMR, 2006, 35 (01) :27-37
[26]   Rapid determination of protein folds using residual dipolar couplings [J].
Fowler, CA ;
Tian, F ;
Al-Hashimi, HM ;
Prestegard, JH .
JOURNAL OF MOLECULAR BIOLOGY, 2000, 304 (03) :447-460
[27]   Determination of protein global folds using backbone residual dipolar coupling and long-range NOE restraints [J].
Giesen, AW ;
Homans, SW ;
Brown, JM .
JOURNAL OF BIOMOLECULAR NMR, 2003, 25 (01) :63-71
[28]   CORRELATION OF CONNECTED TRANSITIONS BY TWO-DIMENSIONAL NMR-SPECTROSCOPY [J].
GRIESINGER, C ;
SORENSEN, OW ;
ERNST, RR .
JOURNAL OF CHEMICAL PHYSICS, 1986, 85 (12) :6837-6852
[29]   Automated NMR protein structure calculation [J].
Güntert, P .
PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY, 2003, 43 (3-4) :105-125
[30]   PROCESSING OF MULTIDIMENSIONAL NMR DATA WITH THE NEW SOFTWARE PROSA [J].
GUNTERT, P ;
DOTSCH, V ;
WIDER, G ;
WUTHRICH, K .
JOURNAL OF BIOMOLECULAR NMR, 1992, 2 (06) :619-629