J-GFT NMR for precise measurement of mutually correlated nuclear spin-spin couplings

被引:20
作者
Atreya, Hanudatta S.
Garcia, Erwin
Shen, Yang
Szyperski, Thomas [1 ]
机构
[1] SUNY Buffalo, NW Struct Genom Consortium, Buffalo, NY 14260 USA
[2] SUNY Buffalo, NY Consortium Membrane Prot Struct, Dept Chem, Buffalo, NY 14260 USA
关键词
D O I
10.1021/ja066586s
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
G-matrix Fourier transform (GFT) NMR spectroscopy is presented for accurate and precise measurement of chemical shifts and nuclear spin-spin couplings correlated according to spin system. The new approach, named "J-GFT NMR", is based on a largely extended GFT NMR formalism and promises to have a broad impact on projection NMR spectroscopy. Specifically, constant-time J-GFT (6,2)D (HA-CA-CO)-N-HN was implemented for simultaneous measurement of five mutually correlated NMR parameters, that is, N-15 backbone chemical shifts and the four one-bond spin-spin couplings C-13(alpha)-H-1(alpha), C-13(alpha)-C-13', N-15-C-13', and N-15-H-1(Nu). The experiment was applied for measuring residual dipolar couplings (RDCs) in an 8 kDa protein Z-domain aligned with Pf1 phages. Comparison with RDC values extracted from conventional NMR experiments reveals that RDCs are measured with high precision and accuracy, which is attributable to the facts that (i) the use of constant time evolution ensures that signals do not broaden whenever multiple RDCs are jointly measured in a single dimension and (ii) RDCs are multiply encoded in the multiplets arising from the joint sampling. This corresponds to measuring the couplings multiple times in a statistically independent manner. A key feature of J-GFT NMR, i.e., the correlation of couplings according to spin systems without reference to sequential resonance assignments, promises to be particularly valuable for rapid identification of backbone conformation and classification of protein fold families on the basis of statistical analysis of dipolar couplings.
引用
收藏
页码:680 / 692
页数:13
相关论文
共 98 条
[1]   Spin-state selection filters for the measurement of heteronuclear one-bond coupling constants [J].
Andersson, P ;
Weigelt, J ;
Otting, G .
JOURNAL OF BIOMOLECULAR NMR, 1998, 12 (03) :435-441
[2]   Protein backbone structure determination using only residual dipolar couplings from one ordering medium [J].
Andrec, M ;
Du, PC ;
Levy, RM .
JOURNAL OF BIOMOLECULAR NMR, 2001, 21 (04) :335-347
[3]   Rapid NMR data collection [J].
Atreya, HS ;
Szyperski, T .
NUCLEAR MAGNETIC RESONANCE OF BIOLOGICAL MACROMOLECULES, PART C, 2005, 394 :78-108
[4]   Resonance assignment of proteins with high shift degeneracy based on 5D spectral information encoded in G2FT NMR experiments [J].
Atreya, HS ;
Eletsky, A ;
Szyperski, T .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (13) :4554-4555
[5]   G-matrix Fourier transform NMR spectroscopy for complete protein resonance assignment [J].
Atreya, HS ;
Szyperski, T .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (26) :9642-9647
[6]   THE PROGRAM XEASY FOR COMPUTER-SUPPORTED NMR SPECTRAL-ANALYSIS OF BIOLOGICAL MACROMOLECULES [J].
BARTELS, C ;
XIA, TH ;
BILLETER, M ;
GUNTERT, P ;
WUTHRICH, K .
JOURNAL OF BIOMOLECULAR NMR, 1995, 6 (01) :1-10
[7]   Weak alignment offers new NMR opportunities to study protein structure and dynamics [J].
Bax, A .
PROTEIN SCIENCE, 2003, 12 (01) :1-16
[8]   Dipolar couplings in macromolecular structure determination [J].
Bax, A ;
Kontaxis, G ;
Tjandra, N .
NUCLEAR MAGNETIC RESONANCE OF BIOLOGICAL MACROMOLECULES, PT B, 2001, 339 :127-174
[9]   The Protein Data Bank [J].
Berman, HM ;
Westbrook, J ;
Feng, Z ;
Gilliland, G ;
Bhat, TN ;
Weissig, H ;
Shindyalov, IN ;
Bourne, PE .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242
[10]   Optimized set of two-dimensional experiments for fast sequential assignment, secondary structure determination, and backbone fold validation of 13C/15N-labelled proteins [J].
Bersch, B ;
Rossy, E ;
Covès, J ;
Brutscher, B .
JOURNAL OF BIOMOLECULAR NMR, 2003, 27 (01) :57-67