A graphical user interface (NWUSA) for Raman spectral processing, analysis and feature recognition

被引:34
作者
Song, Dongliang [1 ]
Chen, Yishen [1 ]
Li, Jie [1 ]
Wang, Haifeng [1 ]
Ning, Tian [1 ]
Wang, Shuang [1 ]
机构
[1] Northwest Univ, State Key Lab Photon Technol Western China Energy, Inst Photon & Photon Technol, 1 Xuefu Ave,Guodu Educ & Technol Ind Zone, Xian 710127, Shaanxi, Peoples R China
基金
中国国家自然科学基金;
关键词
analysis software; classification recognition; graphical user interface; NWUSA; Raman spectroscopy; spectral processing; SECRETASE INHIBITOR; SPECTROSCOPY; TISSUE; DAPT;
D O I
10.1002/jbio.202000456
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
It is a practical necessity for non-professional users to interpret biologically derived Raman spectral information for obtaining accurate and reliable analytical results. An integrated Raman spectral analysis software (NWUSA) was developed for spectral processing, analysis, and feature recognition. It provides a user-friendly graphical interface to perform the following preprocessing tasks: spectral range selection, cosmic ray removal, polynomial fitting based background subtraction, Savitzky-Golay smoothing, area-under-curve normalization, mean-centered procedure, as well as multivariate analysis algorithms including principal component analysis (PCA), linear discriminant analysis, partial least squares-discriminant analysis, support vector machine (SVM), and PCA-SVM. A spectral dataset obtained from two different samples was utilized to evaluate the performance of the developed software, which demonstrated that the analysis software can quickly and accurately achieve functional requirements in spectral data processing and feature recognition. Besides, the open-source software can not only be customized with more novel functional modules to suit the specific needs, but also benefit many Raman based investigations, especially for clinical usages.
引用
收藏
页数:12
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共 30 条
  • [1] Classification tools in chemistry. Part 1: linear models. PLS-DA
    Ballabio, Davide
    Consonni, Viviana
    [J]. ANALYTICAL METHODS, 2013, 5 (16) : 3790 - 3798
  • [2] Characterizing variability in in vivo Raman spectroscopic properties of different anatomical sites of normal tissue in the oral cavity
    Bergholt, Mads Sylvest
    Zheng, Wei
    Huang, Zhiwei
    [J]. JOURNAL OF RAMAN SPECTROSCOPY, 2012, 43 (02) : 255 - 262
  • [3] In vivo Raman spectroscopy of breast tumors prephotodynamic and postphotodynamic therapy
    Bhattacharjee, Tanmoy
    Fontana, Leticia C.
    Raniero, Leandro
    Ferreira-Strixino, Juliana
    [J]. JOURNAL OF RAMAN SPECTROSCOPY, 2018, 49 (05) : 786 - 791
  • [4] Bilal M., 2016, OPT EXPRESS, V7, P2249
  • [5] Bouzalmat Anissa, 2014, Journal of Emerging Technologies in Web Intelligence, V6, P64, DOI 10.4304/jetwi.6.1.64-68
  • [6] Gannet: A Batch-Processing Tool for the Quantitative Analysis of Gamma-Aminobutyric Acid-Edited MR Spectroscopy Spectra
    Edden, Richard A. E.
    Puts, Nicolaas A. J.
    Harris, Ashley D.
    Barker, Peter B.
    Evans, C. John
    [J]. JOURNAL OF MAGNETIC RESONANCE IMAGING, 2014, 40 (06) : 1445 - 1452
  • [7] Nasopharyngeal cancer detection based on blood plasma surface-enhanced Raman spectroscopy and multivariate analysis
    Feng, Shangyuan
    Chen, Rong
    Lin, Juqiang
    Pan, Jianji
    Chen, Guannan
    Li, Yongzeng
    Cheng, Min
    Huang, Zufang
    Chen, Jiesi
    Zeng, Haishan
    [J]. BIOSENSORS & BIOELECTRONICS, 2010, 25 (11) : 2414 - 2419
  • [8] The Rametrix LITE Toolbox v1.0 for MATLAB®
    Fisher, Amanda K.
    Carswell, William F.
    Athamneh, Ahmad I. M.
    Sullivan, Meaghan C.
    Robertson, John L.
    Bevan, David R.
    Senger, Ryan S.
    [J]. JOURNAL OF RAMAN SPECTROSCOPY, 2018, 49 (05) : 885 - 896
  • [9] Study of both fingerprint and high wavenumber Raman spectroscopy of pathological nasopharyngeal tissues
    Huang, Wei
    Wu, Shanshan
    Chen, Maowen
    Sun, Liqing
    Li, Yongzeng
    Huang, Meizhen
    Huang, Shaohua
    Xu, Zhihong
    Chen, Rong
    Zeng, Haishan
    [J]. JOURNAL OF RAMAN SPECTROSCOPY, 2015, 46 (06) : 537 - 544
  • [10] Huang Z., 2010, PHOTOCHEM PHOTOBIOL, V81, P1219