Life in a drop: Sampling environmental DNA for marine fishery management and ecosystem monitoring

被引:66
作者
Gilbey, John [1 ]
Carvalho, Gary [2 ]
Castilho, Rita [3 ]
Coscia, Ilaria [4 ]
Coulson, Mark W. [5 ]
Dahle, Geir [6 ]
Derycke, Sofie [7 ]
Francisco, Sara M. [8 ]
Helyar, Sarah J. [9 ]
Johansen, Torild [10 ]
Junge, Claudia [10 ]
Layton, Kara K. S. [11 ]
Martinsohn, Jann [12 ]
Matejusova, Iveta [13 ]
Robalo, Joana I. [8 ]
Rodriguez-Ezpeleta, Naiara [14 ]
Silva, Goncalo [8 ]
Strammer, Ilona [15 ]
Vasemagi, Anti [16 ]
Volckaert, Filip A. M. [17 ]
机构
[1] Freshwater Fisheries Lab, Marine Scotland, Faskally, Scotland
[2] Bangor Univ, Sch Biol Sci, Mol Ecol & Fisheries Genet Lab, Deiniol Rd, Bangor, Gwynedd, Wales
[3] Univ Algarve, Ctr Marine Sci, CCMAR, Campus Gambelas, P-8005139 Faro, Portugal
[4] Univ Salford, Sch Sci Engn & Environm, Peel Bldg, Salford, Lancs, England
[5] Fisheries & Oceans Canada, 200 Kent St, Ottawa, ON, Canada
[6] Inst Marine Res, POB 1870, NO-5817 Bergen, Norway
[7] Flanders Res Inst Agr Fisheries & Food ILVO, Aquat Environm & Qual, Ankerstr 1, B-8400 Oostende, Belgium
[8] Inst Univ, MARE Marine & Environm Sci Ctr, ISPA, Rua Jardim Tabaco 34, P-1149041 Lisbon, Portugal
[9] Queens Univ Belfast, Sch Biol Sci, Inst Global Food Secur, Belfast, Antrim, North Ireland
[10] Inst Marine Res, Tromso, Norway
[11] Univ Aberdeen, Sch Biol Sci, Aberdeen, Scotland
[12] EC Joint Res Ctr, Water & Marine Resources, TP051 Bldg 5a,Via Enrico Fermi 2749, I-21027 Ispra, Italy
[13] Marine Scotland, Marine Lab, Victoria Rd, Aberdeen, Scotland
[14] Basque Res & Technol Alliance BRTA, AZTI, Marine Res, Txatxarramendi Ugartea Z-G, E-48395 Sukarrieta, Bizkaia, Spain
[15] Catholic Univ Louvain, Pl l Univ 1, B-1348 Louvain La Neuve, Belgium
[16] Swedish Univ Agr Sci, Dept Aquat Resources, SE-70215 Drottningholm, Sweden
[17] Katholieke Univ Leuven, Lab Biodivers & Evolutionary Genom, Charles Deberiotstraat 32,Box 2439, B-3000 Leuven, Belgium
基金
比利时弗兰德研究基金会;
关键词
Environmental DNA; EDNA; Management; Ecosystem; Fisheries; BIODIVERSITY; EDNA; QUANTIFICATION; POPULATION; OCCUPANCY; ABUNDANCE; FUTURE; RATES; TOOL;
D O I
10.1016/j.marpol.2020.104331
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
Science-based management of marine fisheries and effective ecosystem monitoring both require the analysis of large amounts of often complex and difficult to collect information. Legislation also increasingly requires the attainment of good environmental status, which again demands collection of data to enable efficient monitoring and management of biodiversity. Such data is traditionally obtained as a result of research surveys through the capture and/or visual identification of organisms. Recent years have seen significant advances in the utilisation of environmental DNA (eDNA) in the marine environment in order to develop alternative cost-effective ways to gather relevant data. Such approaches attempt to identify and/or quantify the species present at a location through the detection of extra-organismal DNA in the environment. These new eDNA based approaches have the potential to revolutionise data collection in the marine environment using non-invasive sampling methods and providing snapshots of biodiversity beyond the capacity of traditional sampling. Here we present a non-technical summary of different approaches in the field of eDNA, and emphasise the broad application of this approach, with value for the governance and management of marine aquatic ecosystems. The review focuses on identifying those tools which are now readily applicable and those which show promise but are currently in development and require further validations. The aim is to provide an understanding of techniques and concepts that can be used by managers without genetic or genomic expertise when consulting with specialists to perform joint evaluations of the utility of the approaches.
引用
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页数:9
相关论文
共 93 条
[1]   Efficient identification of Microtus cabrerae excrements using noninvasive molecular analysis [J].
Alasaad, Samer ;
Sanchez, Antonio ;
Alberto Marchal, Juan ;
Piriz, Ana ;
Garrido-Garcia, Jose A. ;
Carro, Francisco ;
Romero, Ismael ;
Soriguer, Ramon C. .
CONSERVATION GENETICS RESOURCES, 2011, 3 (01) :127-129
[2]   Persistence of marine fish environmental DNA and the influence of sunlight [J].
Andruszkiewicz, Elizabeth A. ;
Sassoubre, Lauren M. ;
Boehm, Alexandria B. .
PLOS ONE, 2017, 12 (09)
[3]   Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding [J].
Andruszkiewicz, Elizabeth A. ;
Starks, Hilary A. ;
Chavez, Francisco P. ;
Sassoubre, Lauren M. ;
Block, Barbara A. ;
Boehm, Alexandria B. .
PLOS ONE, 2017, 12 (04)
[4]  
[Anonymous], 2019, BIOLOGY-BASEL, DOI DOI 10.1038/S42003-019-0696-8
[5]  
[Anonymous], 2010, ENCY EARTH
[6]  
[Anonymous], 2020, ScienceDaily
[7]   The Magnitude of Global Marine Species Diversity [J].
Appeltans, Ward ;
Ahyong, Shane T. ;
Anderson, Gary ;
Angel, Martin V. ;
Artois, Tom ;
Bailly, Nicolas ;
Bamber, Roger ;
Barber, Anthony ;
Bartsch, Ilse ;
Berta, Annalisa ;
Blazewicz-Paszkowycz, Magdalena ;
Bock, Phil ;
Boxshall, Geoff ;
Boyko, Christopher B. ;
Brandao, Simone Nunes ;
Bray, Rod A. ;
Bruce, Niel L. ;
Cairns, Stephen D. ;
Chan, Tin-Yam ;
Cheng, Lanna ;
Collins, Allen G. ;
Cribb, Thomas ;
Curini-Galletti, Marco ;
Dahdouh-Guebas, Farid ;
Davie, Peter J. F. ;
Dawson, Michael N. ;
De Clerck, Olivier ;
Decock, Wim ;
De Grave, Sammy ;
de Voogd, Nicole J. ;
Domning, Daryl P. ;
Emig, Christian C. ;
Erseus, Christer ;
Eschmeyer, William ;
Fauchald, Kristian ;
Fautin, Daphne G. ;
Feist, Stephen W. ;
Fransen, Charles H. J. M. ;
Furuya, Hidetaka ;
Garcia-Alvarez, Oscar ;
Gerken, Sarah ;
Gibson, David ;
Gittenberger, Arjan ;
Gofas, Serge ;
Gomez-Daglio, Liza ;
Gordon, Dennis P. ;
Guiry, Michael D. ;
Hernandez, Francisco ;
Hoeksema, Bert W. ;
Hopcroft, Russell R. .
CURRENT BIOLOGY, 2012, 22 (23) :2189-2202
[8]   Environmental DNA evidence of transfer of North Sea molluscs across tropical waters through ballast water [J].
Ardura, Alba ;
Zaiko, Anastasija ;
Martinez, Jose L. ;
Samuiloviene, Aurelija ;
Borrell, Yaisel ;
Garcia-Vazquez, Eva .
JOURNAL OF MOLLUSCAN STUDIES, 2015, 81 :495-501
[9]   Adapting metabarcoding-based benthic biomonitoring into routine marine ecological status assessment networks [J].
Aylagas, Eva ;
Borja, Angel ;
Muxika, Inigo ;
Rodriguez-Ezpeleta, Naiara .
ECOLOGICAL INDICATORS, 2018, 95 :194-202
[10]   Biodiversity assessment of tropical shelf eukaryotic communities via pelagic eDNA metabarcoding [J].
Bakker, Judith ;
Wangensteen, Owen S. ;
Baillie, Charles ;
Buddo, Dayne ;
Chapman, Demian D. ;
Gallagher, Austin J. ;
Guttridge, Tristan L. ;
Hertler, Heidi ;
Mariani, Stefano .
ECOLOGY AND EVOLUTION, 2019, 9 (24) :14341-14355