Wavelets in bioinformatics and computational biology:: state of art and perspectives

被引:144
作者
Liò, P
机构
[1] Univ Cambridge, Dept Zool, Cambridge, England
[2] European Bioinformat Inst, Hinxton, Cambs, England
关键词
D O I
10.1093/bioinformatics/19.1.2
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Motivation: At a recent meetingdagger, the wavelet transform was depicted as a small child kicking back at its father, the Fourier transform. Wavelets are more efficient and faster than Fourier methods in capturing the essence of data. Nowadays there is a growing interest in using wavelets in the analysis of biological sequences and molecular biology-related signals. Results: This review is intended to summarize the potential of state of the art wavelets, and in particular wavelet statistical methodology, in different areas of molecular biology: genome sequence, protein structure and microarray data analysis. I conclude by discussing the use of wavelets in modeling biological structures.
引用
收藏
页码:2 / 9
页数:8
相关论文
共 77 条
[1]   Wavelet thresholding via a Bayesian approach [J].
Abramovich, F ;
Sapatinas, T ;
Silverman, BW .
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY, 1998, 60 :725-749
[2]   Adaptive thresholding of wavelet coefficients [J].
Abramovich, F ;
Benjamini, Y .
COMPUTATIONAL STATISTICS & DATA ANALYSIS, 1996, 22 (04) :351-361
[3]  
ALDROUBI A, 1996, WAVELETS MED BIOL
[4]   The period gene controls courtship song cycles in Drosophila melanogaster [J].
Alt, S ;
Ringo, J ;
Talyn, B ;
Bray, W ;
Dowse, H .
ANIMAL BEHAVIOUR, 1998, 56 :87-97
[5]  
AMATO U, 1997, REV ROUMAINE MATH PU, V42, P481
[6]  
Antoniadis A, 1996, SCAND J STAT, V23, P313
[7]  
ANTONIADIS A, 2001, J STAT SOFT, V6, pI6
[8]   What can we learn with wavelets about DNA sequences? [J].
Arneodo, A ;
D'Aubenton-Carafa, Y ;
Audit, B ;
Bacry, E ;
Muzy, JF ;
Thermes, C .
PHYSICA A, 1998, 249 (1-4) :439-448
[9]  
ARNEODO A, 1996, PHYSICA D, V1328, P21
[10]   Long-range correlations between DNA bending sites: Relation to the structure and dynamics of nucleosomes [J].
Audit, B ;
Vaillant, C ;
Arneodo, A ;
d'Aubenton-Carafa, Y ;
Thermes, C .
JOURNAL OF MOLECULAR BIOLOGY, 2002, 316 (04) :903-918