The importance of uncertainty quantification in model reproducibility

被引:35
作者
Volodina, Victoria [1 ]
Challenor, Peter [1 ,2 ]
机构
[1] British Lib, Alan Turing Inst, 96 Euston Rd, London NW1 2DB, England
[2] Univ Exeter, Coll Engn Math & Phys Sci, Exeter EX4 4QE, Devon, England
来源
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES | 2021年 / 379卷 / 2197期
基金
英国工程与自然科学研究理事会;
关键词
emulation; Bayesian methods; error estimates; SENSITIVITY-ANALYSIS; COMPUTER; CALIBRATION; SIMULATION; DESIGN; CONVECTION; SCHEME;
D O I
10.1098/rsta.2020.0071
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Many computer models possess high-dimensional input spaces and substantial computational time to produce a single model evaluation. Although such models are often 'deterministic', these models suffer from a wide range of uncertainties. We argue that uncertainty quantification is crucial for computer model validation and reproducibility. We present a statistical framework, termed history matching, for performing global parameter search by comparing model output to the observed data. We employ Gaussian process (GP) emulators to produce fast predictions about model behaviour at the arbitrary input parameter settings allowing output uncertainty distributions to be calculated. History matching identifies sets of input parameters that give rise to acceptable matches between observed data and model output given our representation of uncertainties. Modellers could proceed by simulating computer models' outputs of interest at these identified parameter settings and producing a range of predictions. The variability in model results is crucial for inter-model comparison as well as model development. We illustrate the performance of emulation and history matching on a simple one-dimensional toy model and in application to a climate model. This article is part of the theme issue 'Reliability and reproducibility in computational science: implementing verification, validation and uncertainty quantification in silico'.
引用
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页数:16
相关论文
共 66 条
[1]  
Alan Turing Institute, 2020, TUR WAY HDB REPR SCI
[2]  
Alan Turing Institute, 2020, MOGP EM
[3]   Bayesian History Matching of Complex Infectious Disease Models Using Emulation: A Tutorial and a Case Study on HIV in Uganda [J].
Andrianakis, Ioannis ;
Vernon, Ian R. ;
McCreesh, Nicky ;
McKinley, Trevelyan J. ;
Oakley, Jeremy E. ;
Nsubuga, Rebecca N. ;
Goldstein, Michael ;
White, Richard G. .
PLOS COMPUTATIONAL BIOLOGY, 2015, 11 (01)
[4]   Efficient History Matching of a High Dimensional Individual-Based HIV Transmission Model [J].
Andrianakis, Loannis ;
McCreesh, Nicky ;
Vernon, Ian ;
McKinley, Trevelyan J. ;
Oakley, Jeremy E. ;
Nsubuga, Rebecca N. ;
Goldstein, Michael ;
White, Richard G. .
SIAM-ASA JOURNAL ON UNCERTAINTY QUANTIFICATION, 2017, 5 (01) :694-719
[5]   STOCHASTIC KRIGING FOR SIMULATION METAMODELING [J].
Ankenman, Bruce ;
Nelson, Barry L. ;
Staum, Jeremy .
2008 WINTER SIMULATION CONFERENCE, VOLS 1-5, 2008, :362-370
[6]  
[Anonymous], 2020, THE ECONOMIST APR
[7]   Predicting the Output From a Stochastic Computer Model When a Deterministic Approximation is Available [J].
Baker, Evan ;
Challenor, Peter ;
Eames, Matt .
JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS, 2020, 29 (04) :786-797
[8]   Objective calibration of regional climate models [J].
Bellprat, O. ;
Kotlarski, S. ;
Luethi, D. ;
Schaer, C. .
JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES, 2012, 117
[9]   Replication or Exploration? Sequential Design for Stochastic Simulation Experiments [J].
Binois, Mickael ;
Huang, Jiangeng ;
Gramacy, Robert B. ;
Ludkovski, Mike .
TECHNOMETRICS, 2019, 61 (01) :7-23
[10]   Marine boundary layer clouds at the heart of tropical cloud feedback uncertainties in climate models [J].
Bony, S ;
Dufresne, JL .
GEOPHYSICAL RESEARCH LETTERS, 2005, 32 (20) :1-4