Expanding the Dynamic Range of a Transcription Factor-Based Biosensor in Saccharomyces cerevisiae

被引:48
作者
Dabirian, Yasaman [1 ,2 ]
Li, Xiaowei [1 ]
Chen, Yun [1 ,2 ]
David, Florian [1 ,2 ]
Nielsen, Jens [1 ,2 ,3 ,4 ]
Siewers, Verena [1 ,2 ]
机构
[1] Chalmers Univ Technol, Dept Biol & Biol Engn, SE-41296 Gothenburg, Sweden
[2] Chalmers Univ Technol, Novo Nordisk Fdn, Ctr Biosustainabil, SE-41296 Gothenburg, Sweden
[3] Tech Univ Denmark, Novo Nordisk Fdn, Ctr Biosustainabil, DK-2800 Lyngby, Denmark
[4] Beijing Univ Chem Technol, Beijing Adv Innovat Ctr Soft Matter Sci & Engn, Beijing 100029, Peoples R China
关键词
Saccharomyces cerevisiae; promoter engineering; biosensor; maximum dynamic range; malonyl-CoA; fapO/FapR; REGULATOR SYSTEM; DESIGN; PATHWAY; ACID; TOOLKIT; PROTEIN; VECTOR; SENSOR; GENES;
D O I
10.1021/acssynbio.9b00144
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Metabolite biosensors are useful tools for high throughput screening approaches and pathway regulation approaches. An important feature of biosensors is the dynamic range. To expand the maximum dynamic range of a transcription factor-based biosensor in Saccharomyces cerevi-siae, using the fapO/FapR system from Bacillus subtilis as an example case, five native promoters, including constitutive and glucose-regulated ones, were modified. By evaluating different binding site (BS) positions in the core promoters, we identified locations that resulted in a high maximum dynamic range with low expression under repressed conditions. We further identified BS positions in the upstream element region of the TEF1 promoter that did not influence the native promoter strength but resulted in repression in the presence of a chimeric repressor consisting of FapR and the yeast repressor Mig1. These modified promoters with broad dynamic ranges will provide useful information for the engineering of future biosensors and their use in complex genetic circuits.
引用
收藏
页码:1968 / 1975
页数:15
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