Staphylococcus aureus Small Colony Variants (SCVs): News From a Chronic Prosthetic Joint Infection

被引:73
作者
Loss, Guilherme [1 ]
Simoes, Patricia Martins [2 ,3 ]
Valour, Florent [3 ,4 ]
Cortes, Marina Farrel [5 ]
Gonzaga, Luiz [1 ]
Bergot, Marine [3 ]
Trouillet-Assant, Sophie [6 ]
Josse, Jerome [3 ]
Diot, Alan [3 ]
Ricci, Emiliano [3 ]
Vasconcelos, Ana Tereza [1 ]
Laurent, Frederic [2 ,3 ]
机构
[1] Lab Nacl Comp Cient, Rio De Janeiro, Brazil
[2] Northern Hosp Grp, IAI Dept Clin Microbiol, Hosp Civils Lyon, Natl Reference Ctr Staphylococci, Lyon, France
[3] CIRI, Lyon, France
[4] Northern Hosp Grp, Infect Dis Dept, Hosp Civils Lyon, Lyon, France
[5] Univ Fed Rio de Janeiro, Inst Microbiol Prof Paulo de Goes, Rio De Janeiro, Brazil
[6] Ctr Hosp Lyon Sud, Joint Res Unit HCL BioMerieux, Hosp Civils Lyon, Pierre Benite, France
关键词
Staphylococcus aureus; small colony variant; prosthetic joint infection; chronic infection; rifampicin resistance; DIFFERENTIAL EXPRESSION ANALYSIS; ANTIMICROBIAL ACTIVITY; RIFAMPIN RESISTANCE; STRINGENT RESPONSE; OSTEOMYELITIS; PERSISTENT; VIRULENCE; BACTERIA; MUTATION; IRON;
D O I
10.3389/fcimb.2019.00363
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Small colony variants (SCV) of Staphylococcus aureus have been reported as implicated in chronic infections. Here, we investigated the genomic and transcriptomic changes involved in the evolution from a wild-type to a SCV from in a patient with prosthetic joint infection relapse. The SCV presented a stable phenotype with no classical auxotrophy and the emergence of rifampicin resistance. Whole Genome Sequencing (WGS) analysis showed only the loss of a 42.5 kb phage and 3 deletions, among which one targeting the rpoB gene, known to be the target of rifampicin and to be associated to SCV formation in the context of a constitutively active stringent response. Transcriptomic analysis highlighted a specific signature in the SCV strain including a complex, multi-level strategy of survival and adaptation to chronicity within the host including a protection from the inflammatory response, an evasion of the immune response, a constitutively activated stringent response and a scavenging of iron sources.
引用
收藏
页数:12
相关论文
共 72 条
[11]   Optimized digital counting colonies of clonogenic assays using ImageJ software and customized macros: Comparison with manual counting [J].
Cai, Zhongli ;
Chattopadhyay, Niladri ;
Liu, Wenchao Jessica ;
Chan, Conrad ;
Pignol, Jean-Philippe ;
Reilly, Raymond M. .
INTERNATIONAL JOURNAL OF RADIATION BIOLOGY, 2011, 87 (11) :1135-1146
[12]  
Chin CS, 2013, NAT METHODS, V10, P563, DOI [10.1038/nmeth.2474, 10.1038/NMETH.2474]
[13]  
Conlon BP, 2016, NAT MICROBIOL, V1, DOI [10.1038/NMICROBIOL.2016.51, 10.1038/nmicrobiol.2016.51]
[14]   An RpoB Mutation Confers Dual Heteroresistance to Daptomycin and Vancomycin in Staphylococcus aureus [J].
Cui, Longzhu ;
Isii, Taisuke ;
Fukuda, Minoru ;
Ochiai, Tomonori ;
Neoh, Hui-min ;
Camargo, Ilana Lopes Baratella da Cunha ;
Watanabe, Yukiko ;
Shoji, Mitsutaka ;
Hishinuma, Tomomi ;
Hiramatsu, Keiichi .
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2010, 54 (12) :5222-5233
[15]   ppGpp Conjures Bacterial Virulence [J].
Dalebroux, Zachary D. ;
Svensson, Sarah L. ;
Gaynor, Erin C. ;
Swanson, Michele S. .
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 2010, 74 (02) :171-+
[16]   progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement [J].
Darling, Aaron E. ;
Mau, Bob ;
Perna, Nicole T. .
PLOS ONE, 2010, 5 (06)
[17]   Methylglyoxal production in bacteria:: suicide or survival? [J].
Ferguson, GP ;
Tötemeyer, S ;
MacLean, MJ ;
Booth, IR .
ARCHIVES OF MICROBIOLOGY, 1998, 170 (04) :209-219
[18]   Site-Specific Mutation of Staphylococcus aureus VraS Reveals a Crucial Role for the VraR-VraS Sensor in the Emergence of Glycopeptide Resistance [J].
Galbusera, Elena ;
Renzoni, Adriana ;
Andrey, Diego O. ;
Monod, Antoinette ;
Barras, Christine ;
Tortora, Paolo ;
Polissi, Alessandra ;
Kelley, William L. .
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2011, 55 (03) :1008-1020
[19]   The RpoB H148Y Rifampicin Resistance Mutation and an Active Stringent Response Reduce Virulence and Increase Resistance to Innate Immune Responses in Staphylococcus aureus [J].
Gao, Wei ;
Cameron, David R. ;
Davies, John K. ;
Kostoulias, Xenia ;
Stepnell, Justin ;
Tuck, Kellie L. ;
Yeaman, Michael R. ;
Peleg, Anton Y. ;
Stinear, Timothy P. ;
Howden, Benjamin P. .
JOURNAL OF INFECTIOUS DISEASES, 2013, 207 (06) :929-939
[20]   Two Novel Point Mutations in Clinical Staphylococcus aureus Reduce Linezolid Susceptibility and Switch on the Stringent Response to Promote Persistent Infection [J].
Gao, Wei ;
Chua, Kyra ;
Davies, John K. ;
Newton, Hayley J. ;
Seemann, Torsten ;
Harrison, Paul F. ;
Holmes, Natasha E. ;
Rhee, Hyun-Woo ;
Hong, Jong-In ;
Hartland, Elizabeth L. ;
Stinear, Timothy P. ;
Howden, Benjamin P. .
PLOS PATHOGENS, 2010, 6 (06)