Dissipation-driven selection of states in non-equilibrium chemical networks

被引:30
作者
Busiello, Daniel Maria [1 ]
Liang, Shiling [1 ]
Piazza, Francesco [2 ,3 ]
De Los Rios, Paolo [1 ,4 ]
机构
[1] Ecole Polytech Fed Lausanne EPFL, Inst Phys, Lausanne, Switzerland
[2] CNRS UPR 4301, Ctr Biophys Mol CBM, Rue C Sadron, F-45071 Orleans, France
[3] Univ Orleans, UFR CoSt Sci & Tech, 1 Rue Chartres, F-45100 Orleans, France
[4] Ecole Polytech Fed Lausanne EPFL, Inst Bioengn, Lausanne, Switzerland
基金
瑞士国家科学基金会;
关键词
D O I
10.1038/s42004-021-00454-w
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Life has most likely originated as a consequence of processes taking place in non-equilibrium conditions (e.g. in the proximity of deep-sea thermal vents) selecting states of matter that would have been otherwise unfavorable at equilibrium. Here we present a simple chemical network in which the selection of states is driven by the thermodynamic necessity of dissipating heat as rapidly as possible in the presence of a thermal gradient: states participating to faster reactions contribute the most to the dissipation rate, and are the most populated ones in non-equilibrium steady-state conditions. Building upon these results, we show that, as the complexity of the chemical network increases, the velocity of the reaction path leading to a given state determines its selection, giving rise to non-trivial localization phenomena in state space. A byproduct of our studies is that, in the presence of a temperature gradient, thermophoresis-like behavior inevitably appears depending on the transport properties of each individual state, thus hinting at a possible microscopic explanation of this intriguing yet still not fully understood phenomenon. Recent works have highlighted the role of energy sources in driving nonequilibrium behaviours in chemical reaction networks. Here, the authors theoretically describe linear reaction networks with thermal gradients to highlight the basic rules governing most favourable states, relating them to kinetic and dissipation rates.
引用
收藏
页数:7
相关论文
共 36 条
[1]   Efficient conversion of chemical energy into mechanical work by Hsp70 chaperones [J].
Assenza, Salvatore ;
Sassi, Alberto Stefano ;
Kellner, Ruth ;
Schuler, Benjamin ;
De Los Rios, Paolo ;
Barducci, Alessandro .
ELIFE, 2019, 8
[2]   Adiabatic operation of a molecular machine [J].
Astumian, R. Dean .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (50) :19715-19718
[3]   Kinetic asymmetry allows macromolecular catalysts to drive an information ratchet [J].
Astumian, R. Dean .
NATURE COMMUNICATIONS, 2019, 10 (1)
[4]   Structure for energy cycle: a unique status of the second law of thermodynamics for living systems [J].
Bai, Shunong ;
Ge, Hao ;
Qian, Hong .
SCIENCE CHINA-LIFE SCIENCES, 2018, 61 (10) :1266-1273
[5]   Multiple-scale stochastic processes: Decimation, averaging and beyond [J].
Bo, Stefano ;
Celani, Antonio .
PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS, 2017, 670 :1-59
[6]   Entropy production for coarse-grained dynamics [J].
Busiello, D. M. ;
Hidalgo, J. ;
Maritan, A. .
NEW JOURNAL OF PHYSICS, 2019, 21 (07)
[7]   Similarities and differences between non-equilibrium steady states and time-periodic driving in diffusive systems [J].
Busiello, D. M. ;
Jarzynski, C. ;
Raz, O. .
NEW JOURNAL OF PHYSICS, 2018, 20
[8]   Entropy production in systems with random transition rates close to equilibrium [J].
Busiello, Daniel M. ;
Hidalgo, Jorge ;
Maritan, Amos .
PHYSICAL REVIEW E, 2017, 96 (06)
[9]  
Dass A.V, 2020, EQUILIBRIUM NONEQUIL
[10]   Why molecules move along a temperature gradient [J].
Duhr, Stefan ;
Braun, Dieter .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (52) :19678-19682