Two hundred and fifty-four biota samples (four species of invertebrates and ten species of fish) were collected from the Pearl River Estuary between 2005 and 2007 and one hundred and twenty four individual or composite samples were analyzed for polybrominated Biphenyl ethers (PBDEs). The concentrations of PBDEs in organisms varied from 6.2 to 208 ng/g lipid weight. This PBDE level was significantly lower than those collected in 2004, showing a decreasing trend of PBDEs in biota in the study area. Trophic magnification factors (TMFs) for nine BDE congeners were calculated with values ranging from 0.78 to 3.0. TMFs of BDE47, 66, 100, 99. 154, and 153 were statistically greater than one, indicating a biomagnifcation potential for these congeners. Significant positive correlations were also found between concentrations of the total PBDEs, BDE28, 47, 66, 100, 99, 154, and 153 and lipid content in biota, indicating the that bioconcentration also played an important role in the accumulation of PBDEs. No correlation between trophic level and lipid content was found, suggesting that biomagnification was not the result of lipid content effect but indeed occurred. The concentration ratios of BDE99 to BDE100 were much lower in biota than that in water implying that potential congener-specific biotransformation of PBDEs occurred and influenced the biomagnification of BDE congeners. (C) 2009 Elsevier Ltd. All rights reserved.