A Novel Immune-Related Prognostic Model for Response to Immunotherapy and Survival in Patients With Lung Adenocarcinoma

被引:31
作者
Zheng, Yujia [1 ]
Tian, He [1 ]
Zhou, Zheng [1 ]
Xiao, Chu [1 ]
Liu, Hengchang [2 ]
Liu, Yu [1 ]
Wang, Liyu [1 ]
Fan, Tao [1 ]
Zheng, Bo [3 ]
Tan, Fengwei [1 ]
Xue, Qi [1 ]
Gao, Gengshu [1 ]
Li, Chunxiang [1 ]
He, Jie [1 ]
机构
[1] Chinese Acad Med Sci, Peking Union Med Coll, Natl Clin Res Ctr Canc, Dept Thorac Surg,Natl Canc Ctr,Canc Hosp, Beijing, Peoples R China
[2] Chinese Acad Med Sci, Peking Union Med Coll, Natl Clin Res Ctr Canc, Dept Colorectal Surg,Natl Canc Ctr,Canc Hosp, Beijing, Peoples R China
[3] Chinese Acad Med Sci, Peking Union Med Coll, Natl Clin Res Ctr Canc, Dept Pathol,Natl Canc Ctr,Canc Hosp, Beijing, Peoples R China
基金
国家重点研发计划; 中国国家自然科学基金;
关键词
lung adenocarcinoma; immune infiltration; prognosis; immunotherapy; risk prediction model; signature; TUMOR MICROENVIRONMENT; CANCER; EXPRESSION; CELLS; LANDSCAPE; BLOCKADE; BIOLOGY; GENES; CD160;
D O I
10.3389/fcell.2021.651406
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Lung adenocarcinoma is one of the most malignant diseases worldwide. The immune checkpoint inhibitors targeting programmed cell death protein 1 (PD-1) and programmed cell death-ligand 1 (PD-L1) have changed the paradigm of lung cancer treatment; however, there are still patients who are resistant. Further exploration of the immune infiltration status of lung adenocarcinoma (LUAD) is necessary for better clinical management. In our study, the CIBERSORT method was used to calculate the infiltration status of 22 immune cells in LUAD patients from The Cancer Genome Atlas (TCGA). We clustered LUAD based on immune infiltration status by consensus clustering. The differentially expressed genes (DEGs) between cold and hot tumor group were identified. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis were performed. Last, we constructed a Cox regression model. We found that the infiltration of M0 macrophage cells and follicular helper T cells predicted an unfavorable overall survival of patients. Consensus clustering of 22 immune cells identified 5 clusters with different patterns of immune cells infiltration, stromal cells infiltration, and tumor purity. Based on the immune scores, we classified these five clusters into hot and cold tumors, which are different in transcription profiles. Hot tumors are enriched in cytokine-cytokine receptor interaction, while cold tumors are enriched in metabolic pathways. Based on the hub genes and prognostic-related genes, we developed a Cox regression model to predict the overall survival of patients with LUAD and validated in other three datasets. In conclusion, we developed an immune-related signature that can predict the prognosis of patients, which might facilitate the clinical application of immunotherapy in LUAD.
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页数:14
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共 46 条
[1]   The lung microenvironment: an important regulator of tumour growth and metastasis [J].
Altorki, Nasser K. ;
Markowitz, Geoffrey J. ;
Gao, Dingcheng ;
Port, Jeffrey L. ;
Saxena, Ashish ;
Stiles, Brendon ;
McGraw, Timothy ;
Mittal, Vivek .
NATURE REVIEWS CANCER, 2019, 19 (01) :9-31
[2]   HYPE or HOPE: the prognostic value of infiltrating immune cells in cancer [J].
Barnes, Tristan A. ;
Amir, Eitan .
BRITISH JOURNAL OF CANCER, 2017, 117 (04) :451-460
[3]   The CD160, BTLA, LIGHT/HVEM pathway: a bidirectional switch regulating T-cell activation [J].
Cai, Guifang ;
Freeman, Gordon J. .
IMMUNOLOGICAL REVIEWS, 2009, 229 :244-258
[4]   Molecular biomarkers for lung adenocarcinoma [J].
Calvayrac, Olivier ;
Pradines, Anne ;
Pons, Elvire ;
Mazieres, Julien ;
Guibert, Nicolas .
EUROPEAN RESPIRATORY JOURNAL, 2017, 49 (04)
[5]   Metabolic Diversity in Human Non-Small Cell Lung Cancer Cells [J].
Chen, Pei-Hsuan ;
Cai, Ling ;
Huffman, Kenneth ;
Yang, Chendong ;
Kim, Jiyeon ;
Faubert, Brandon ;
Boroughs, Lindsey ;
Ko, Bookyung ;
Sudderth, Jessica ;
McMillan, Elizabeth A. ;
Girard, Luc ;
Chen, Dong ;
Peyton, Michael ;
Shields, Misty D. ;
Yao, Bo ;
Shames, David S. ;
Kim, Hyun Seok ;
Timmons, Brenda ;
Sekine, Ikuo ;
Britt, Rebecca ;
Weber, Stephanie ;
Byers, Lauren A. ;
Heymach, John V. ;
Chen, Jing ;
White, Michael A. ;
Minna, John D. ;
Xiao, Guanghua ;
DeBerardinis, Ralph J. .
MOLECULAR CELL, 2019, 76 (05) :838-+
[6]   T Follicular Helper Cell Biology: A Decade of Discovery and Diseases [J].
Crotty, Shane .
IMMUNITY, 2019, 50 (05) :1132-1148
[7]   Tumour-infiltrating lymphocytes and prognosis in different subtypes of breast cancer: a pooled analysis of 3771 patients treated with neoadjuvant therapy [J].
Denkert, Carsten ;
von Minckwitz, Gunter ;
Darb-Esfahani, Silvia ;
Lederer, Bianca ;
Heppner, Barbara I. ;
Weber, Karsten E. ;
Budczies, Jan ;
Huober, Jens ;
Klauschen, Frederick ;
Furlanetto, Jenny ;
Schmitt, Wolfgang D. ;
Blohmer, Jens-Uwe ;
Karn, Thomas ;
Pfitzner, Berit M. ;
Kuemmel, Sherko ;
Engels, Knut ;
Schneeweiss, Andreas ;
Hartmann, Arndt ;
Noske, Aurelia ;
Fasching, Peter A. ;
Jackisch, Christian ;
van Mackelenbergh, Marion ;
Sinn, Peter ;
Schem, Christian ;
Hanusch, Claus ;
Untch, Michael ;
Loibl, Sibylle .
LANCET ONCOLOGY, 2018, 19 (01) :40-50
[8]   Genomic alterations in lung adenocarcinoma [J].
Devarakonda, Siddhartha ;
Morgensztern, Daniel ;
Govindan, Ramaswamy .
LANCET ONCOLOGY, 2015, 16 (07) :E342-E351
[9]   Immunotherapy in Non-Small Cell Lung Cancer: Facts and Hopes [J].
Doroshow, Deborah B. ;
Sanmamed, Miguel F. ;
Hastings, Katherine ;
Politi, Katerina ;
Rimm, David L. ;
Chen, Lieping ;
Melero, Ignacio ;
Schalper, Kurt A. ;
Herbst, Roy S. .
CLINICAL CANCER RESEARCH, 2019, 25 (15) :4592-4602
[10]   Lung adenocarcinoma subtypes based on expression of human airway basal cell genes [J].
Fukui, Tomoya ;
Shaykhiev, Renat ;
Agosto-Perez, Francisco ;
Mezey, Jason G. ;
Downey, Robert J. ;
Travis, William D. ;
Crystal, Ronald G. .
EUROPEAN RESPIRATORY JOURNAL, 2013, 42 (05) :1332-1344