The Future of Blood Testing Is the Immunome

被引:30
作者
Arnaout, Ramy A. [1 ,2 ,3 ]
Prak, Eline T. Luning [4 ]
Schwab, Nicholas [5 ,6 ]
Rubelt, Florian [7 ]
机构
[1] Beth Israel Deaconess Med Ctr, Dept Pathol, 330 Brookline Ave, Boston, MA 02215 USA
[2] Beth Israel Deaconess Med Ctr, Dept Med, Div Clin Informat, Boston, MA 02215 USA
[3] Harvard Med Sch, Dept Pathol, Boston, MA 02115 USA
[4] Univ Penn, Dept Pathol & Lab Med, Perelman Sch Med, Philadelphia, PA USA
[5] Univ Munster, Dept Neurol, Munster, Germany
[6] Univ Munster, Inst Translat Neurol, Munster, Germany
[7] Roche Sequencing Solut, Pleasanton, CA 94588 USA
来源
FRONTIERS IN IMMUNOLOGY | 2021年 / 12卷
关键词
adaptive immune receptor repertoire (AIRR); diagnostic test; T-cell receptor repertoire; antibody repertoire; analyses; immunome; immunomics; clinical laboratory testing; CELL-RECEPTOR REPERTOIRES;
D O I
10.3389/fimmu.2021.626793
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
It is increasingly clear that an extraordinarily diverse range of clinically important conditions-including infections, vaccinations, autoimmune diseases, transplants, transfusion reactions, aging, and cancers-leave telltale signatures in the millions of V(D)J-rearranged antibody and T cell receptor [TR per the Human Genome Organization (HUGO) nomenclature but more commonly known as TCR] genes collectively expressed by a person's B cells (antibodies) and T cells. We refer to these as the immunome. Because of its diversity and complexity, the immunome provides singular opportunities for advancing personalized medicine by serving as the substrate for a highly multiplexed, near-universal blood test. Here we discuss some of these opportunities, the current state of immunome-based diagnostics, and highlight some of the challenges involved. We conclude with a call to clinicians, researchers, and others to join efforts with the Adaptive Immune Receptor Repertoire Community (AIRR-C) to realize the diagnostic potential of the immunome.
引用
收藏
页数:6
相关论文
共 61 条
  • [1] Combining Health Data Uses to Ignite Health System Learning
    Ainsworth, J.
    Buchan, I.
    [J]. METHODS OF INFORMATION IN MEDICINE, 2015, 54 (06) : 479 - 487
  • [2] VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium
    Bagaev, Dmitry, V
    Vroomans, Renske M. A.
    Samir, Jerome
    Stervbo, Ulrik
    Rius, Cristina
    Dolton, Garry
    Greenshields-Watson, Alexander
    Attaf, Meriem
    Egorov, Evgeny S.
    Zvyagin, Ivan, V
    Babel, Nina
    Cole, David K.
    Godkin, Andrew J.
    Sewell, Andrew K.
    Kesmir, Can
    Chudakov, Dmitriy M.
    Luciani, Fabio
    Shugay, Mikhail
    [J]. NUCLEIC ACIDS RESEARCH, 2020, 48 (D1) : D1057 - D1062
  • [3] Analysis of the B cell receptor repertoire in six immune-mediated diseases
    Bashford-Rogers, R. J. M.
    Bergamaschi, L.
    McKinney, E. F.
    Pombal, D. C.
    Mescia, F.
    Lee, J. C.
    Thomas, D. C.
    Flint, S. M.
    Kellam, P.
    Jayne, D. R. W.
    Lyons, P. A.
    Smith, K. G. C.
    [J]. NATURE, 2019, 574 (7776) : 122 - +
  • [4] Antibody repertoire analysis in polygenic autoimmune diseases
    Bashford-Rogers, Rachael J. M.
    Smith, Kenneth G. C.
    Thomas, David C.
    [J]. IMMUNOLOGY, 2018, 155 (01) : 3 - 17
  • [5] Sequencing as a first-line methodology for cystic fibrosis carrier screening
    Beauchamp, Kyle A.
    Taber, Katherine A. Johansen
    Grauman, Peter, V
    Spurka, Lindsay
    Lim-Harashima, Jeraldine
    Svenson, Ashley
    Goldberg, James D.
    Muzzey, Dale
    [J]. GENETICS IN MEDICINE, 2019, 21 (11) : 2569 - 2576
  • [6] Age-associated distribution of normal B-cell and plasma cell subsets in peripheral blood
    Blanco, Elena
    Perez-Andres, Martin
    Arriba-Mendez, Sonia
    Contreras-Sanfeliciano, Teresa
    Criado, Ignacio
    Pelak, Ondrej
    Serra-Caetano, Ana
    Romero, Alfonso
    Puig, Noemi
    Remesal, Ana
    Canizales, Juan Torres
    Lopez-Granados, Eduardo
    Kalina, Tomas
    Sousa, Ana E.
    van Zelm, Menno
    van der Burg, Mirjam
    van Dongen, Jacques J. M.
    Orfao, Alberto
    [J]. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY, 2018, 141 (06) : 2208 - +
  • [7] Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data
    Breden, Felix
    Prak, Eline T. Luning
    Peters, Bjoern
    Rubelt, Florian
    Schramm, Chaim A.
    Busse, Christian E.
    Heiden, Jason A. Vander
    Christley, Scott
    Bukhari, Syed Ahmad Chan
    Thorogood, Adrian
    Matsen, Frederick A.
    Wine, Yariv
    Laserson, Uri
    Klatzmann, David
    Douek, Daniel C.
    Lefranc, Marie-Paule
    Collins, Andrew M.
    Bubela, Tania
    Kleinstein, Steven H.
    Watson, Corey T.
    Cowell, Lindsay G.
    Scott, Jamie K.
    Kepler, Thomas B.
    [J]. FRONTIERS IN IMMUNOLOGY, 2017, 8
  • [8] High-throughput antibody sequencing reveals genetic evidence of global regulation of the naive and memory repertoires that extends across individuals
    Briney, B. S.
    Willis, J. R.
    McKinney, B. A.
    Crowe, J. E., Jr.
    [J]. GENES AND IMMUNITY, 2012, 13 (06) : 469 - 473
  • [9] Age-Related Decrease in TCR Repertoire Diversity Measured with Deep and Normalized Sequence Profiling
    Britanova, Olga V.
    Putintseva, Ekaterina V.
    Shugay, Mikhail
    Merzlyak, Ekaterina M.
    Turchaninova, Maria A.
    Staroverov, Dmitriy B.
    Bolotin, Dmitriy A.
    Lukyanov, Sergey
    Bogdanova, Ekaterina A.
    Mamedov, Ilgar Z.
    Lebedev, Yuriy B.
    Chudakov, Dmitriy M.
    [J]. JOURNAL OF IMMUNOLOGY, 2014, 192 (06) : 2689 - 2698
  • [10] Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic leukaemia; a EuroClonality-NGS validation study
    Brueggemann, Monika
    Kotrova, Michaela
    Knecht, Henrik
    Bartram, Jack
    Boudjogrha, Myriam
    Bystry, Vojtech
    Fazio, Grazia
    Fronkova, Eva
    Giraud, Mathieu
    Grioni, Andrea
    Hancock, Jeremy
    Herrmann, Dietrich
    Jimenez, Cristina
    Krejci, Adam
    Moppett, John
    Reigl, Tomas
    Salson, Mikael
    Scheijen, Blanca
    Schwarz, Martin
    Songia, Simona
    Svaton, Michael
    van Dongen, Jacques J. M.
    Villarese, Patrick
    Wakeman, Stephanie
    Wright, Gary
    Cazzaniga, Giovanni
    Davi, Frederic
    Garcia-Sanz, Ramon
    Gonzalez, David
    Groenen, Patricia J. T. A.
    Hummel, Michael
    Macintyre, Elizabeth A.
    Stamatopoulos, Kostas
    Pott, Christiane
    Trka, Jan
    Darzentas, Nikos
    Langerak, Anton W.
    [J]. LEUKEMIA, 2019, 33 (09) : 2241 - 2253