Rare truncating variations and risk of schizophrenia: Whole-exome sequencing in three families with affected siblings and a three-stage follow-up study in a Japanese population

被引:8
作者
Watanabe, Yuichiro [1 ]
Nunokawa, Ayako [1 ,2 ]
Shibuya, Masako [1 ]
Ikeda, Masashi [3 ]
Hishimoto, Akitoyo [4 ]
Kondo, Kenji [3 ]
Egawa, Jun [1 ]
Kaneko, Naoshi [1 ,2 ]
Muratake, Tatsuyuki [1 ,5 ]
Saito, Takeo [3 ]
Okazaki, Satoshi [4 ]
Shimasaki, Ayu [3 ]
Igeta, Hirofumi [1 ]
Inoue, Emiko [1 ]
Hoya, Satoshi [1 ]
Sugai, Takuro [1 ]
Sora, Ichiro [4 ]
Iwata, Nakao [3 ]
Someya, Toshiyuki [1 ]
机构
[1] Niigata Univ, Dept Psychiat, Grad Sch Med & Dent Sci, Chuo Ku, 757 Asahimachidori Ichibancho, Niigata 9518510, Japan
[2] Oojima Hosp, 5103 Oojima, Sanjo, Niigata 9550094, Japan
[3] Fujita Hlth Univ, Sch Med, Dept Psychiat, Toyoake, Aichi 4701192, Japan
[4] Kobe Univ, Grad Sch Med, Dept Psychiat, Chuo Ku, 7-5-1 Kusunoki Cho, Kobe, Hyogo 6500017, Japan
[5] Furumachi Mental Clin, Chuo Ku, 608 Furumachidori Gobancho, Niigata 9518063, Japan
基金
日本学术振兴会;
关键词
Affected siblings; Case-control study; Rare truncating variations; Schizophrenia; Whole-exome sequencing; DE-NOVO MUTATIONS; AUTISM SPECTRUM DISORDER; GENOME-WIDE ASSOCIATION; VARIANTS; CAMKII; GENE; PROTEIN; BETA; PLASTICITY; SYNAPSES;
D O I
10.1016/j.psychres.2015.12.011
中图分类号
R749 [精神病学];
学科分类号
100205 ;
摘要
Rare inherited variations in multiplex families with schizophrenia are suggested to play a role in the genetic etiology of schizophrenia. To further investigate the role of rare inherited variations, we performed whole-exome sequencing (WES) in three families, each with two affected siblings. We also performed a three-stage follow-up case-control study in a Japanese population with a total of 2617 patients and 2396 controls. WES identified 15 rare truncating variations that were variously present in the two affected siblings in each family. These variations did not necessarily segregate with schizophrenia within families, and they were different in each family. In the follow-up study, four variations (NWDI W169X, LCORL R7fsX53, CAMK2B L497fsX497, and C9orf89 Q102X) had a higher mutant allele frequency in patients compared with controls, although these associations were not significant in the combined population, which comprised the first-, second- and third-stage populations. These results do not support a contribution of the rare truncating variations identified in the three families to the genetic etiology of schizophrenia. (C) 2015 Elsevier Ireland Ltd. All rights reserved.
引用
收藏
页码:13 / 18
页数:6
相关论文
共 35 条
[1]   Genomewide high-density SNP linkage analysis of 236 Japanese families supports the existence of schizophrenia susceptibility loci on chromosomes 1p, 14q, and 20p [J].
Arinami, T ;
Arinami, T ;
Ohtsuki, T ;
Ishiguro, H ;
Ujike, H ;
Tanaka, Y ;
Morita, Y ;
Mineta, M ;
Takeichi, M ;
Yamada, S ;
Imamura, A ;
Ohara, K ;
Shibuya, H ;
Ohara, K ;
Suzuki, Y ;
Muratake, T ;
Kaneko, N ;
Someya, T ;
Inada, T ;
Yoshikawa, T ;
Toyota, T ;
Yamada, K ;
Kojima, T ;
Takahashi, S ;
Osamu, O ;
Shinkai, T ;
Nakamura, M ;
Fukuzako, H ;
Hashiguchi, T ;
Niwa, S ;
Ueno, T ;
Tachikawa, H ;
Hori, T ;
Asada, T ;
Nanko, S ;
Kunugi, H ;
Hashimoto, R ;
Ozaki, N ;
Iwata, N ;
Harano, M ;
Arai, H ;
Ohnuma, T ;
Kusumi, I ;
Koyama, T ;
Yoneda, H ;
Fukumaki, Y ;
Shibata, H ;
Kaneko, S ;
Higuchi, H ;
Yasui-Furukori, N .
AMERICAN JOURNAL OF HUMAN GENETICS, 2005, 77 (06) :937-944
[2]   Generation and Behavior Characterization of CaMKIIβ Knockout Mice [J].
Bachstetter, Adam D. ;
Webster, Scott J. ;
Tu, Tao ;
Goulding, Danielle S. ;
Haiech, Jacques ;
Watterson, D. Martin ;
Van Eldik, Linda J. .
PLOS ONE, 2014, 9 (08)
[3]   βCaMKII Plays a Nonenzymatic Role in Hippocampal Synaptic Plasticity and Learning by Targeting αCaMKII to Synapses [J].
Borgesius, Nils Z. ;
van Woerden, Geeske M. ;
Buitendijk, Gabrielle H. S. ;
Keijzer, Nanda ;
Jaarsma, Dick ;
Hoogenraad, Casper C. ;
Elgersma, Ype .
JOURNAL OF NEUROSCIENCE, 2011, 31 (28) :10141-10148
[4]   Uncovering the roles of rare variants in common disease through whole-genome sequencing [J].
Cirulli, Elizabeth T. ;
Goldstein, David B. .
NATURE REVIEWS GENETICS, 2010, 11 (06) :415-425
[5]   The NLR-related protein NWD1 is associated with prostate cancer and modulates androgen receptor signaling [J].
Correa, Ricardo G. ;
Krajewska, Maryla ;
Ware, Carl F. ;
Gerlic, Motti ;
Reed, John C. .
ONCOTARGET, 2014, 5 (06) :1666-1682
[6]   Rare coding variants in the phospholipase D3 gene confer risk for Alzheimer's disease [J].
Cruchaga, Carlos ;
Karch, Celeste M. ;
Jin, Sheng Chih ;
Benitez, Bruno A. ;
Cai, Yefei ;
Guerreiro, Rita ;
Harari, Oscar ;
Norton, Joanne ;
Budde, John ;
Bertelsen, Sarah ;
Jeng, Amanda T. ;
Cooper, Breanna ;
Skorupa, Tara ;
Carrell, David ;
Levitch, Denise ;
Hsu, Simon ;
Choi, Jiyoon ;
Ryten, Mina ;
Sassi, Celeste ;
Bras, Jose ;
Gibbs, J. Raphael ;
Hernandez, Dena G. ;
Lupton, Michelle K. ;
Powell, John ;
Forabosco, Paola ;
Ridge, Perry G. ;
Corcoran, Christopher D. ;
Tschanz, Joann T. ;
Norton, Maria C. ;
Munger, Ronald G. ;
Schmutz, Cameron ;
Leary, Maegan ;
Demirci, F. Yesim ;
Bamne, Mikhil N. ;
Wang, Xingbin ;
Lopez, Oscar L. ;
Ganguli, Mary ;
Medway, Christopher ;
Turton, James ;
Lord, Jenny ;
Braae, Anne ;
Barber, Imelda ;
Brown, Kristelle ;
Pastor, Pau ;
Lorenzo-Betancor, Oswaldo ;
Brkanac, Zoran ;
Scott, Erick ;
Topol, Eric ;
Morgan, Kevin ;
Rogaeva, Ekaterina .
NATURE, 2014, 505 (7484) :550-+
[7]   Whole-exome sequencing in a family with a monozygotic twin pair concordant for autism spectrum disorder and a follow-up study [J].
Egawa, Jun ;
Watanabe, Yuichiro ;
Sugimoto, Atsunori ;
Nunokawa, Ayako ;
Shibuya, Masako ;
Igeta, Hirofumi ;
Inoue, Emiko ;
Hoya, Satoshi ;
Orime, Naoki ;
Hayashi, Taketsugu ;
Sugiyama, Toshiro ;
Someya, Toshiyuki .
PSYCHIATRY RESEARCH, 2015, 229 (1-2) :599-601
[8]   Novel Rare Missense Variations and Risk of Autism Spectrum Disorder: Whole-Exome Sequencing in Two Families with Affected Siblings and a Two-Stage Follow-Up Study in a Japanese Population [J].
Egawa, Jun ;
Watanabe, Yuichiro ;
Wang, Chenyao ;
Inoue, Emiko ;
Sugimoto, Atsunori ;
Sugiyama, Toshiro ;
Igeta, Hirofumi ;
Nunokawa, Ayako ;
Shibuya, Masako ;
Kushima, Itaru ;
Orime, Naoki ;
Hayashi, Taketsugu ;
Okada, Takashi ;
Uno, Yota ;
Ozaki, Norio ;
Someya, Toshiyuki .
PLOS ONE, 2015, 10 (03)
[9]   De novo mutations in schizophrenia implicate synaptic networks [J].
Fromer, Menachem ;
Pocklington, Andrew J. ;
Kavanagh, David H. ;
Williams, Hywel J. ;
Dwyer, Sarah ;
Gormley, Padhraig ;
Georgieva, Lyudmila ;
Rees, Elliott ;
Palta, Priit ;
Ruderfer, Douglas M. ;
Carrera, Noa ;
Humphreys, Isla ;
Johnson, Jessica S. ;
Roussos, Panos ;
Barker, Douglas D. ;
Banks, Eric ;
Milanova, Vihra ;
Grant, Seth G. ;
Hannon, Eilis ;
Rose, Samuel A. ;
Chambert, Kimberly ;
Mahajan, Milind ;
Scolnick, Edward M. ;
Moran, Jennifer L. ;
Kirov, George ;
Palotie, Aarno ;
McCarroll, Steven A. ;
Holmans, Peter ;
Sklar, Pamela ;
Owen, Michael J. ;
Purcell, Shaun M. ;
O'Donovan, Michael C. .
NATURE, 2014, 506 (7487) :179-+
[10]   Increased exonic de novo mutation rate in individuals with schizophrenia [J].
Girard, Simon L. ;
Gauthier, Julie ;
Noreau, Anne ;
Xiong, Lan ;
Zhou, Sirui ;
Jouan, Loubna ;
Dionne-Laporte, Alexandre ;
Spiegelman, Dan ;
Henrion, Edouard ;
Diallo, Ousmane ;
Thibodeau, Pascale ;
Bachand, Isabelle ;
Bao, Jessie Y. J. ;
Tong, Amy Hin Yan ;
Lin, Chi-Ho ;
Millet, Bruno ;
Jaafari, Nematollah ;
Joober, Ridha ;
Dion, Patrick A. ;
Lok, Si ;
Krebs, Marie-Odile ;
Rouleau, Guy A. .
NATURE GENETICS, 2011, 43 (09) :860-U65