Flavobacterium lotistagni sp. nov. and Flavobacterium celericrescens sp. nov., isolated from freshwater habitats

被引:8
作者
Wu, Jia-Hong [1 ]
You, Ya-Xiu [2 ]
Young, Chiu-Chung [3 ]
Kwon, Soon-Wo [4 ]
Chen, Wen-Ming [2 ]
机构
[1] Tsinghua Univ, Inst Appl Chem, Dept Chem Engn, Beijing 100084, Peoples R China
[2] Natl Kaohsiung Univ Sci & Technol, Dept Seafood Sci, Lab Microbiol, 142 Hai Chuan Rd, Kaohsiung 811, Taiwan
[3] Natl Chung Hsing Univ, Coll Agr & Nat Resources, Dept Soil & Environm Sci, Taichung 402, Taiwan
[4] Natl Inst Agr Sci, Agr Microbiol Div, Rural Dev Adm, Jeollabuk Do 55365, South Korea
关键词
Bacteroidetes; Flavobacterium celericrescens; Flavobacteriaceae; Flavobacteriales; Flavobacteriia; Flavobacterium lotistagni; PROPOSED MINIMAL STANDARDS; EMENDED DESCRIPTION; GENUS FLAVOBACTERIUM; FAMILY; ANNOTATION; ALGORITHM; SEQUENCES; SOFTWARE;
D O I
10.1099/ijsem.0.004682
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
This study presents taxonomic descriptions of strains CYK-4(T) and TWA-26(T) isolated from freshwater habitats in Taiwan. Both strains were Gram-stain-negative, strictly aerobic, motile by gliding and rod-shaped. Phylogenetic analyses based on 16S rRNA gene sequences and coding sequences of 92 protein clusters indicated that both strains belonged to the genus Flavobacterium. Analysis of 16S rRNA gene sequences showed that strains CYK-4(T) and TWA-26(T) shared 92.7 % sequence similarity and were most closely related to Flavobacterium ovatum W201E(T) (95.6%) and Flavobacterium aquaticum JC164(T) (96.7 %), respectively. Both strains shared common chemotaxonomic characteristics comprising MK-6 as the main isoprenoid quinone, iso-C-15:0 and iso-C-15:1 G as the predominant fatty acids, phosphatidylethanolamine as the principal polar lipid, and homospermidine as the major polyamine. The DNA G+C contents of strains CYK-4(T) and TWA- 26(T) were 41.5 and 31.8 mol%, respectively. The average nucleotide identity, average amino acid identity and digital DNA-DNA hybridization values between these two novel isolates and their closest relatives were below the cut-off values of 95-96, 90 and 70 %, respectively, used for species demarcation. On the basis of phenotypic and genotypic properties and phylogenetic inference, both strains should be classified as novel species within the genus Flavobacterium, for which the names Flavobacterium lotistagni sp. nov. (type strain CYK-4(T)=BCRC 81192(T)=LMG 31330(T)) and Flavobacterium celericrescens sp. nov. (type strain TWA-26(T)=BCRC 81200(T)=LMG 31333(T)) are proposed.
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共 53 条
[1]   The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera [J].
Anzai, Y ;
Kudo, Y ;
Oyaizu, H .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1997, 47 (02) :249-251
[2]   The RAST server: Rapid annotations using subsystems technology [J].
Aziz, Ramy K. ;
Bartels, Daniela ;
Best, Aaron A. ;
DeJongh, Matthew ;
Disz, Terrence ;
Edwards, Robert A. ;
Formsma, Kevin ;
Gerdes, Svetlana ;
Glass, Elizabeth M. ;
Kubal, Michael ;
Meyer, Folker ;
Olsen, Gary J. ;
Olson, Robert ;
Osterman, Andrei L. ;
Overbeek, Ross A. ;
McNeil, Leslie K. ;
Paarmann, Daniel ;
Paczian, Tobias ;
Parrello, Bruce ;
Pusch, Gordon D. ;
Reich, Claudia ;
Stevens, Rick ;
Vassieva, Olga ;
Vonstein, Veronika ;
Wilke, Andreas ;
Zagnitko, Olga .
BMC GENOMICS, 2008, 9 (1)
[3]   Flavobacterium magnum sp. nov., Flavobacterium pallidum sp. nov., Flavobacterium crocinum sp. nov. and Flavobacterium album sp. nov [J].
Baek, Chaeyun ;
Shin, Su-Kyoung ;
Yi, Hana .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2018, 68 (12) :3837-3843
[4]   SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].
Bankevich, Anton ;
Nurk, Sergey ;
Antipov, Dmitry ;
Gurevich, Alexey A. ;
Dvorkin, Mikhail ;
Kulikov, Alexander S. ;
Lesin, Valery M. ;
Nikolenko, Sergey I. ;
Son Pham ;
Prjibelski, Andrey D. ;
Pyshkin, Alexey V. ;
Sirotkin, Alexander V. ;
Vyahhi, Nikolay ;
Tesler, Glenn ;
Alekseyev, Max A. ;
Pevzner, Pavel A. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477
[5]  
Bergey D., 1923, BERGEYS MANUAL DETER
[6]  
Bernardet J.-F., 2006, PROKARYOTES, V7, P481, DOI [10.1007/0-387-30747-8_17, DOI 10.1007/0-387-30747-8_17]
[7]  
Bernardet J-F., 2011, Bergey's manual of systematic bacteriology, V4, P112
[8]   Cutting a gordian knot: Emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom nov (basonym, Cytophaga aquatilis Strohl and Tait 1978) [J].
Bernardet, JF ;
Segers, P ;
Vancanneyt, M ;
Berthe, F ;
Kersters, K ;
Vandamme, P .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1996, 46 (01) :128-148
[9]  
Bernardet JF, 2002, INT J SYST EVOL MICR, V52, P1049, DOI 10.1099/00207713-52-3-1049
[10]   EDGAR 2.0: an enhanced software platform for comparative gene content analyses [J].
Blom, Jochen ;
Kreis, Julian ;
Spaenig, Sebastian ;
Juhre, Tobias ;
Bertelli, Claire ;
Ernst, Corinna ;
Goesmann, Alexander .
NUCLEIC ACIDS RESEARCH, 2016, 44 (W1) :W22-W28