Investigation of the role of spot pattern information in two-dimensional gel electrophoresis image registration

被引:0
|
作者
Xin, Hua-Mei [1 ]
Zhu, Yuemin [1 ]
Goutte, Robert [1 ]
机构
[1] Univ Lyon 1, CNRS, CREATIS LRMN, INSA Lyon,Inserm U630,UMR 5220, F-69621 Villeurbanne, France
关键词
D O I
暂无
中图分类号
TM [电工技术]; TN [电子技术、通信技术];
学科分类号
0808 ; 0809 ;
摘要
Two-dimensional gel electrophoresis (2DGE) images play an important role in the analysis of proteins in proteomics. The registration of 2DGE images is considered as one of key elements in protein identification while it is a difficult problem. This paper investigates the role of spot pattern information in 2DGE image registration by considering two registration schemes, all based on the principle of attraction. The results on both simulated and real gel images show that spot pattern information is pertinent information for 2DGE images registration, and that its use can significantly improve registration accuracy.
引用
收藏
页码:2167 / 2170
页数:4
相关论文
共 50 条
  • [31] TWO-DIMENSIONAL GEL-ELECTROPHORESIS OF PROTEINS
    DUNN, MJ
    JOURNAL OF CHROMATOGRAPHY-BIOMEDICAL APPLICATIONS, 1987, 418 : 145 - 185
  • [32] ISOELECTRIC FOCUSING AND TWO-DIMENSIONAL GEL ELECTROPHORESIS
    Friedman, David B.
    Hoving, Sjouke
    Westermeier, Reiner
    GUIDE TO PROTEIN PURIFICATION, SECOND EDITION, 2009, 463 : 515 - 540
  • [33] Two-Dimensional Gel Electrophoresis: A Reference Protocol
    Saia-Cereda, Veronica M.
    Aquino, Adriano
    Guest, Paul C.
    Martins-de-Souza, Daniel
    PROTEOMIC METHODS IN NEUROPSYCHIATRIC RESEARCH, 2017, 974 : 175 - 182
  • [34] Information transfer between large and small two-dimensional polyacrylamide gel electrophoresis
    Felley-Bosco, E
    Demalte, I
    Barcelo, S
    Sanchez, JC
    Hochstrasser, DF
    Schlegel, W
    Reymond, MA
    ELECTROPHORESIS, 1999, 20 (18) : 3508 - 3513
  • [35] Two-dimensional gel electrophoresis in proteomics: A tutorial
    Rabilloud, Thierry
    Lelong, Cecile
    JOURNAL OF PROTEOMICS, 2011, 74 (10) : 1829 - 1841
  • [36] Two-dimensional gel electrophoresis in bacterial proteomics
    Shirly OTCurreem
    Rory MWatt
    Susanna KPLau
    Patrick CYWoo
    Protein & Cell, 2012, 3 (05) : 346 - 363
  • [37] Preprocessing of two-dimensional gel electrophoresis images
    Kaczmarek, K
    Walczak, B
    de Jong, S
    Vandeginste, BGM
    PROTEOMICS, 2004, 4 (08) : 2377 - 2389
  • [38] TWO-DIMENSIONAL AGAROSE-GEL ELECTROPHORESIS
    SERWER, P
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1985, 190 (SEP): : 39 - AGD
  • [39] MATCHING TWO-DIMENSIONAL GEL ELECTROPHORESIS' SPOTS
    dos Anjos, Antonio
    Ersboll, Bjarne Kjaer
    Al-Tam, Faroq
    Shahbazkia, Hamid Reza
    BIOINFORMATICS: PROCEEDINGS OF THE INTERNATIONAL CONFERENCE ON BIOINFORMATICS MODELS, METHODS AND ALGORITHMS, 2012, : 111 - 117
  • [40] Investigation of charge variants of rViscumin by two-dimensional gel electrophoresis and mass spectrometry
    Lutter, P
    Meyer, HE
    Langer, M
    Witthohn, K
    Dormeyer, W
    Sickmann, A
    Blüggel, M
    ELECTROPHORESIS, 2001, 22 (14) : 2888 - 2897