Neural network training for cross-protocol radiomic feature standardization in computed tomography

被引:21
作者
Andrearczyk, Vincent [1 ]
Depeursinge, Adrien [1 ,2 ]
Muller, Henning [1 ,3 ]
机构
[1] Univ Appl Sci Western Switzerland HES SO, Inst Informat Syst, Sierre, Switzerland
[2] Ecole Polytech Fed Lausanne, Biomed Imaging Grp, Lausanne, Switzerland
[3] Univ Geneva, Geneva, Switzerland
基金
瑞士国家科学基金会;
关键词
quantitative imaging; radiomics; deep learning; standardization; domain adversarial; TEST-RETEST; RECONSTRUCTION; STABILITY; VARIABILITY; CANCER; IMAGES; IMPACT;
D O I
10.1117/1.JMI.6.2.024008
中图分类号
R8 [特种医学]; R445 [影像诊断学];
学科分类号
1002 ; 100207 ; 1009 ;
摘要
Radiomics has shown promising results in several medical studies, yet it suffers from a limited discrimination and informative capability as well as a high variation and correlation with the tomographic scanner types, pixel spacing, acquisition protocol, and reconstruction parameters. We propose and compare two methods to transform quantitative image features in order to improve their stability across varying image acquisition parameters while preserving the texture discrimination abilities. In this way, variations in extracted features are representative of true physiopathological tissue changes in the scanned patients. A first approach is based on a two-layer neural network that can learn a nonlinear standardization transformation of various types of features including handcrafted and deep features. Second, domain adversarial training is explored to increase the invariance of the transformed features to the scanner of origin. The generalization of the proposed approach to unseen textures and unseen scanners is demonstrated by a set of experiments using a publicly available computed tomography texture phantom dataset scanned with various imaging devices and parameters. (C) 2019 Society of Photo-Optical Instrumentation Engineers (SPIE)
引用
收藏
页数:13
相关论文
共 40 条
[1]   Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach [J].
Aerts, Hugo J. W. L. ;
Velazquez, Emmanuel Rios ;
Leijenaar, Ralph T. H. ;
Parmar, Chintan ;
Grossmann, Patrick ;
Cavalho, Sara ;
Bussink, Johan ;
Monshouwer, Rene ;
Haibe-Kains, Benjamin ;
Rietveld, Derek ;
Hoebers, Frank ;
Rietbergen, Michelle M. ;
Leemans, C. Rene ;
Dekker, Andre ;
Quackenbush, John ;
Gillies, Robert J. ;
Lambin, Philippe .
NATURE COMMUNICATIONS, 2014, 5
[2]   Learning Cross-Protocol Radiomics and Deep Feature Standardization from CT Images of Texture Phantoms [J].
Andrearczyk, Vincent ;
Depeursinge, Adrien ;
Mueller, Henning .
MEDICAL IMAGING 2019: IMAGING INFORMATICS FOR HEALTHCARE, RESEARCH, AND APPLICATIONS, 2019, 10954
[3]   Using filter banks in Convolutional Neural Networks for texture classification [J].
Andrearczyk, Vincent ;
Whelan, Paulf. .
PATTERN RECOGNITION LETTERS, 2016, 84 :63-69
[4]  
[Anonymous], PROC CVPR IEEE
[5]  
[Anonymous], P SPIE
[6]  
[Anonymous], 2014, VERY DEEP CONVOLUTIO
[7]  
[Anonymous], P SPIE
[8]  
[Anonymous], CORR
[9]  
[Anonymous], 2016, CoRR
[10]  
[Anonymous], J MACHINE LEARNING R