Characterization of histones and their post-translational modifications by mass spectrometry

被引:106
作者
Garcia, Benjamin A.
Shabanowitz, Jeffrey
Hunt, Donald F. [1 ]
机构
[1] Univ Illinois, Inst Genom Biol, Urbana, IL 61801 USA
[2] Univ Virginia, Dept Chem, Charlottesville, VA 22904 USA
[3] Univ Virginia, Ctr Hlth Sci, Dept Pathol, Charlottesville, VA 22908 USA
关键词
D O I
10.1016/j.cbpa.2006.11.022
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Histone proteins and their accompanying post-translational modifications have received much attention for their ability to affect chromatin structure and, hence, regulate gene expression. Recently, mass spectrometry has become an important complementary tool for the analysis of histone variants and modification sites, for determining the degree of occupancy of these modifications and for quantifying differential expression of these modifications from various samples. Additionally, as advancements in mass spectrometry technologies continue, the ability to read entire 'histone codes' across large regions of histone polypeptides or intact protein is possible. As chromatin biology demands, mass spectrometry has adapted and continues as a key technology for the analysis of gene regulation networks involving histone modifications.
引用
收藏
页码:66 / 73
页数:8
相关论文
共 50 条
  • [21] Expression patterns and post-translational modifications associated with mammalian histone H3 variants
    Hake, SB
    Garcia, BA
    Duncan, EM
    Kauer, M
    Dellaire, G
    Shabanowitz, J
    Bazett-Jones, DP
    Allis, CD
    Hunt, DF
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2006, 281 (01) : 559 - 568
  • [22] Serine 31 phosphorylation of histone variant H3.3 is specific to regions bordering centromeres in metaphase chromosomes
    Hake, SB
    Garcia, BA
    Kauer, M
    Baker, SP
    Shabanowitz, J
    Hunt, DF
    Allis, CD
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (18) : 6344 - 6349
  • [23] Translating the histone code
    Jenuwein, T
    Allis, CD
    [J]. SCIENCE, 2001, 293 (5532) : 1074 - 1080
  • [24] Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications
    Johnson, L
    Mollah, S
    Garcia, BA
    Muratore, TL
    Shabanowitz, J
    Hunt, DF
    Jacobsen, SE
    [J]. NUCLEIC ACIDS RESEARCH, 2004, 32 (22) : 6511 - 6518
  • [25] The transcriptional repressor JHDM3A demethylates trimethyl histone H3 lysine 9 and lysine 36
    Klose, Robert J.
    Yamane, Kenichi
    Bae, Yangjin
    Zhang, Dianzheng
    Erdjument-Bromage, Hediye
    Tempst, Paul
    Wong, Jiemin
    Zhang, Yi
    [J]. NATURE, 2006, 442 (7100) : 312 - 316
  • [26] Acetylation by Tip60 is required for selective histone variant exchange at DNA lesions
    Kusch, T
    Florens, L
    MacDonald, WH
    Swanson, SK
    Glaser, RL
    Yates, JR
    Abmayr, SM
    Washburn, MP
    Workman, JL
    [J]. SCIENCE, 2004, 306 (5704) : 2084 - 2087
  • [27] PTMs on H3 variants before chromatin assembly potentiate their final epigenetic state
    Loyola, Alejandra
    Bonaldi, Tiziana
    Roche, Daniele
    Imhof, Axel
    Almouzni, Genevieve
    [J]. MOLECULAR CELL, 2006, 24 (02) : 309 - 316
  • [28] A role for cell-cycle-regulated histone H3 lysine 56 acetylation in the DNA damage response
    Masumoto, H
    Hawke, D
    Kobayashi, R
    Verreault, A
    [J]. NATURE, 2005, 436 (7048) : 294 - 298
  • [29] Histone H3.3 is enriched in covalent modifications associated with active chromatin
    McKittrick, E
    Gaften, PR
    Ahmad, K
    Henikoff, S
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (06) : 1525 - 1530
  • [30] Characterization of Tetrahymena histone H2B variants and posttranslational populations by electron capture dissociation (ECD) Fourier transform ion cyclotron mass spectrometry (FT-ICR MS)
    Medzihradszky, KF
    Zhang, X
    Chalkley, RJ
    Guan, S
    McFarland, MA
    Chalmers, MJ
    Marshall, AG
    Diaz, RL
    Allis, CD
    Burlingame, AL
    [J]. MOLECULAR & CELLULAR PROTEOMICS, 2004, 3 (09) : 872 - 886