Emergence of single-molecule sequencing and potential for molecular diagnostic applications

被引:10
|
作者
Milos, Patrice M. [1 ]
机构
[1] Helicos BioSci, Cambridge, MA 02139 USA
关键词
DNA; microbial and viral screening; nanopore; noninvasive fetal screening; quantitation; real-time DNA sequencing; RNA; sequencing by synthesis; single-molecule sequencing; tumor genome; NONINVASIVE PRENATAL-DIAGNOSIS; HYBRID SELECTION; EXON CAPTURE; DNA; GENOME; CANCER; OLIGONUCLEOTIDES; ANEUPLOIDY; MICRORNAS; BACTERIAL;
D O I
10.1586/ERM.09.50
中图分类号
R36 [病理学];
学科分类号
100104 ;
摘要
The effective demonstration of single-molecule sequencing at scale over the last several years offers the exciting opportunity for a new era in the field of molecular diagnostics. As we aim to personalize and deliver cost-effective healthcare, we must consider the need to fully integrate genomics into decision-making. We must be able to accurately and cost effectively obtain a complete genome sequence for disease diagnosis, interrogate a molecular signature from blood for therapeutic monitoring, obtain a tumor mutation profile for optimizing therapeutic choice - each molecular diagnostic measurement utilized to better inform patient care. Would a physician or molecular pathology laboratory want to utilize a PCR process in which millions of DNA copies of a patient's nucleic acid are created when an alternative approach allowing direct measurement of the nucleic acids is possible? I would suggest not! In this article we will focus on the emergence of single-molecule sequencing, the single-molecule sequencing methodologies in the marketplace or under development today, as well as the importance of these methods for molecular characterization and diagnosis of disease with the ultimate application for molecular diagnostics.
引用
收藏
页码:659 / 666
页数:8
相关论文
共 50 条
  • [1] A review of the potential of the MinIONTM single-molecule sequencing system for forensic applications
    Plesivkova, Diana
    Richards, Rebecca
    Harbison, SallyAnn
    WILEY INTERDISCIPLINARY REVIEWS: FORENSIC SCIENCE, 2019, 1 (01):
  • [2] Reviving the Transcriptome Studies: An Insight Into the Emergence of Single-Molecule Transcriptome Sequencing
    Wang, Bo
    Kumar, Vivek
    Olson, Andrew
    Ware, Doreen
    FRONTIERS IN GENETICS, 2019, 10
  • [3] The properties and applications of single-molecule DNA sequencing
    Thompson, John F.
    Milos, Patrice M.
    GENOME BIOLOGY, 2011, 12 (02):
  • [4] Plasmonic Nanopores for Single-Molecule Detection and Manipulation: Toward Sequencing Applications
    Garoli, Denis
    Yamazaki, Hirohito
    Maccaferri, Nicolo
    Wanunu, Meni
    NANO LETTERS, 2019, 19 (11) : 7553 - 7562
  • [5] Recent advances in single-molecule sequencing
    Treffer, Regina
    Deckert, Volker
    CURRENT OPINION IN BIOTECHNOLOGY, 2010, 21 (01) : 4 - 11
  • [6] Quantitative analysis of DNA with single-molecule sequencing
    Ohshiro, Takahito
    Tsutsui, Makusu
    Yokota, Kazumichi
    Taniguchi, Masateru
    SCIENTIFIC REPORTS, 2018, 8
  • [7] Paving the way to single-molecule protein sequencing
    Restrepo-Perez, Laura
    Joo, Chirlmin
    Dekker, Cees
    NATURE NANOTECHNOLOGY, 2018, 13 (09) : 786 - 796
  • [8] Nanodevices for Biological and Medical Applications: Development of Single-Molecule Electrical Measurement Method
    Ohshiro, Takahito
    APPLIED SCIENCES-BASEL, 2022, 12 (03):
  • [9] Single-molecule mechanical identification and sequencing
    Ding, Fangyuan
    Manosas, Maria
    Spiering, Michelle M.
    Benkovic, Stephen J.
    Bensimon, David
    Allemand, Jean-Francois
    Croquette, Vincent
    NATURE METHODS, 2012, 9 (04) : 367 - U74
  • [10] A Two-color Single-molecule Sequencing Platform and Its Clinical Applications
    Chen, Fang
    Liu, Bin
    Chen, Meirong
    Jiang, Zefei
    Zhou, Zhiliang
    Wu, Ping
    Zhang, Meng
    Jin, Huan
    Li, Linsen
    Lu, Liuyan
    Shang, Huan
    Liu, Lei
    Chen, Weiyue
    Xu, Jianfeng
    Sun, Ruitao
    Wang, Guangming
    Zheng, Jiao
    Qi, Jifang
    Yang, Bo
    Zeng, Lidong
    Li, Yan
    Lv, Hui
    Zhao, Nannan
    Wang, Wen
    Cai, Jinsen
    Liu, Yongfeng
    Luo, Weiwei
    Zhang, Juan
    Zhang, Yanhua
    Fan, Jicai
    Dan, Haitao
    He, Xuesen
    Huang, Wei
    Sun, Lei
    Yan, Qin
    GENOMICS PROTEOMICS & BIOINFORMATICS, 2024, 22 (01)