An implicit immersed boundary method for three-dimensional fluid-membrane interactions

被引:81
作者
Le, D. V. [1 ,2 ,3 ]
White, J. [2 ,3 ]
Peraire, J. [2 ,4 ]
Lim, K. M. [2 ,5 ]
Khoo, B. C. [2 ,5 ]
机构
[1] Inst High Performance Comp, Singapore 138632, Singapore
[2] Natl Univ Singapore, Singapore MIT Alliance, Singapore 117576, Singapore
[3] MIT, Dept Elect Engn & Comp Sci, Cambridge, MA 02139 USA
[4] MIT, Dept Aeronaut & Astronaut, Cambridge, MA 02139 USA
[5] Natl Univ Singapore, Dept Mech Engn, Singapore 119260, Singapore
关键词
Immersed boundary method; Newton-Krylov method; Navier-Stokes equations; Membrane capsules; Red blood cells; NAVIER-STOKES EQUATIONS; SIMPLE SHEAR-FLOW; PLATELET-AGGREGATION; INDUCED DEFORMATION; STABILITY ANALYSIS; ELASTIC MEMBRANES; OPTICAL TWEEZERS; CONTINUUM MODELS; NUMERICAL-METHOD; SURFACE-TENSION;
D O I
10.1016/j.jcp.2009.08.018
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
We present an implicit immersed boundary method for the incompressible Navier-Stokes equations capable of handling three-dimensional membrane-fluid flow interactions. The goal of our approach is to greatly improve the time step by using the Jacobian-free Newton-Krylov method (JFNK) to advance the location of the elastic membrane implicitly. The most attractive feature of this Jacobian-free approach is Newton-like nonlinear convergence without the cost of forming and storing the true Jacobian. The Generalized Minimal Residual method (GMRES), which is a widely used Krylov-subspace iterative method, is used to update the search direction required for each Newton iteration. Each GMRES iteration only requires the action of the Jacobian in the form of matrix-vector products and therefore avoids the need of forming and storing the Jacobian matrix explicitly. Once the location of the boundary is obtained, the elastic forces acting at the discrete nodes of the membrane are computed using a finite element model. We then use the immersed boundary method to calculate the hydrodynamic effects and fluid-structure interaction effects such as membrane deformation. The present scheme has been validated by several examples including an oscillatory membrane initially placed in a still fluid, capsule membranes in shear flows and large deformation of red blood cells subjected to stretching force. (C) 2009 Elsevier Inc. All rights reserved.
引用
收藏
页码:8427 / 8445
页数:19
相关论文
共 54 条
[1]  
Adams J., FISHPACK EFFICIENT F
[2]   THE TIME-DEPENDENT DEFORMATION OF A CAPSULE FREELY SUSPENDED IN A LINEAR SHEAR-FLOW [J].
BARTHESBIESEL, D ;
RALLISON, JM .
JOURNAL OF FLUID MECHANICS, 1981, 113 (DEC) :251-267
[3]   Curvilinear immersed boundary method for simulating fluid structure interaction with complex 3D rigid bodies [J].
Borazjani, Iman ;
Ge, Liang ;
Sotiropoulos, Fotis .
JOURNAL OF COMPUTATIONAL PHYSICS, 2008, 227 (16) :7587-7620
[4]   Accurate projection methods for the incompressible Navier-Stokes equations [J].
Brown, DL ;
Cortez, R ;
Minion, ML .
JOURNAL OF COMPUTATIONAL PHYSICS, 2001, 168 (02) :464-499
[5]   HYBRID KRYLOV METHODS FOR NONLINEAR-SYSTEMS OF EQUATIONS [J].
BROWN, PN ;
SAAD, Y .
SIAM JOURNAL ON SCIENTIFIC AND STATISTICAL COMPUTING, 1990, 11 (03) :450-481
[6]  
Cai X-C, 1997, P 8 INT C DOM DEC ME
[7]   NONLINEARLY PRECONDITIONED KRYLOV SUBSPACE METHODS FOR DISCRETE NEWTON ALGORITHMS [J].
CHAN, TF ;
JACKSON, KR .
SIAM JOURNAL ON SCIENTIFIC AND STATISTICAL COMPUTING, 1984, 5 (03) :533-542
[8]   Using 3D fluid-structure interaction model to analyse the biomechanical properties of erythrocyte [J].
Chee, C. Y. ;
Lee, H. P. ;
Lu, C. .
PHYSICS LETTERS A, 2008, 372 (09) :1357-1362
[9]   Mechanics of the human red blood cell deformed by optical tweezers [J].
Dao, M ;
Lim, CT ;
Suresh, S .
JOURNAL OF THE MECHANICS AND PHYSICS OF SOLIDS, 2003, 51 (11-12) :2259-2280
[10]   A microscale model of bacterial swimming, chemotaxis and substrate transport [J].
Dillon, R ;
Fauci, L ;
Gaver, D .
JOURNAL OF THEORETICAL BIOLOGY, 1995, 177 (04) :325-340