An overview of recent developments in genomics and associated statistical methods

被引:24
|
作者
Bickel, Peter J. [1 ]
Brown, James B.
Huang, Haiyan [1 ]
Li, Qunhua [1 ]
机构
[1] Univ Calif Berkeley, Dept Stat, Berkeley, CA 94720 USA
关键词
genomics; statistical genomics; experimental biotechnologies; high-dimensional bio-data analysis; FACTOR-BINDING SITES; COPY NUMBER VARIATION; GENE-EXPRESSION DATA; CHIP-SEQ DATA; NUCLEOTIDE-SEQUENCE; WIDE ASSOCIATION; EMPIRICAL BAYES; MICROARRAY DATA; 2-GROUPS MODEL; DNA;
D O I
10.1098/rsta.2009.0164
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The landscape of genomics has changed drastically in the last two decades. Increasingly inexpensive sequencing has shifted the primary focus from the acquisition of biological sequences to the study of biological function. Assays have been developed to study many intricacies of biological systems, and publicly available databases have given rise to integrative analyses that combine information from many sources to draw complex conclusions. Such research was the focus of the recent workshop at the Isaac Newton Institute, 'High dimensional statistics in biology'. Many computational methods from modern genomics and related disciplines were presented and discussed. Using, as much as possible, the material from these talks, we give an overview of modern genomics: from the essential assays that make data-generation possible, to the statistical methods that yield meaningful inference. We point to current analytical challenges, where novel methods, or novel applications of extant methods, are presently needed.
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页码:4313 / 4337
页数:25
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