Computational studies of structure and dynamics of clathrate inhibitor monomers in solution

被引:3
|
作者
Gualdron, Diego A. Gomez [1 ]
Aparicio-Martinez, Santiago [1 ]
Balbuena, Perla B. [1 ]
机构
[1] Texas A&M Univ, Artie McFerrin Dept Chem Engn, College Stn, TX 77843 USA
关键词
D O I
10.1021/ie061123g
中图分类号
TQ [化学工业];
学科分类号
0817 ;
摘要
Theoretical studies of five monomer constituents of gas clathrate inhibitorsvinylpyrrolidone, vinylvalerolactam, L-proline (LP), 1-formylpyrrolidine, and (dimethylaminoethyl)methacrylate (DMAEMA)are performed in the presence of water, with the solvent treated both explicitly and as a continuum. The binding energy increases as the inhibitor is more polarized, but no clear relationship is found between polarization and free energy of solvation values. Comparison of the binding energies of the inhibitor-water complexes and analysis of the hydration shells around the inhibitor sites indicate that short-range interactions influence the clathrate inhibitor effect more than long-range ones do. The balance of hydrophobic and hydrophilic moieties is found to be a determinant factor in the behavior of the inhibitor. In contrast to the other monomers, analyses of the DMAEMA and LP behaviors show that the N site can be associated with the hydrophilic moiety. Besides, DMAEMA has the best hydrophobic solvation around its methyl groups, resembling clathrate formation around methane. The time evolution of the mean square displacement and the power spectrum calculated from velocity autocorrelation functions reveal slight changes in the dynamic behavior of water that are not strong enough to be considered decisive in the inhibition efficiency.
引用
收藏
页码:131 / 142
页数:12
相关论文
共 50 条
  • [31] Computational study on the structure II clathrate hydrate of methane and large guest molecules
    Hamid Erfan-Niya
    Hamid Modarress
    Esmaeil Zaminpayma
    Journal of Inclusion Phenomena and Macrocyclic Chemistry, 2011, 70 : 227 - 239
  • [32] Conditional Membrane Proteins: Solution NMR Studies of Structure, Dynamics, and Function
    Yang, Yuan
    Morales, Krystal A.
    Stewart, Mikaela D.
    Igumenova, Tatyana I.
    EMAGRES, 2015, 4 (04): : 767 - 777
  • [33] Solution structure and backbone dynamics of human Raf-1 kinase inhibitor protein
    Guo, Chenyun
    Yi, Cuiying
    Peng, Yu
    Wen, Yi
    Lin, Donghai
    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2013, 438 (01) : 129 - 132
  • [34] Computational and Experimental Studies of Inhibitor Design for Aldolase A
    Qi, Rui
    Walker, Brandon
    Jing, Zhifeng
    Yu, Maiya
    Stancu, Gabriel
    Edupuganti, Ramakrishna
    Dalby, Kevin N.
    Ren, Pengyu
    JOURNAL OF PHYSICAL CHEMISTRY B, 2019, 123 (28): : 6034 - 6041
  • [35] Classical molecular dynamics of clathrate-methane-water-kinetic inhibitor composite systems
    Gualdron, Diego A. Gomez
    Balbuena, Perla B.
    JOURNAL OF PHYSICAL CHEMISTRY C, 2007, 111 (43): : 15554 - 15564
  • [36] Computational and Experimental Studies of 4-Aminoantipyrine as Corrosion Inhibitor for Mild Steel in Sulphuric Acid Solution
    Ezeoke, Acha U.
    Adeyemi, Olalere G.
    Akerele, Opeyemi A.
    Obi-Egbedi, Nelson O.
    INTERNATIONAL JOURNAL OF ELECTROCHEMICAL SCIENCE, 2012, 7 (01): : 534 - 553
  • [37] STRUCTURE AND DYNAMICS OF CRYSTALLINE C-60.N-PENTANE CLATHRATE
    FAIGEL, G
    TEGZE, M
    PEKKER, S
    KEMENY, T
    INTERNATIONAL JOURNAL OF MODERN PHYSICS B, 1992, 6 (23-24): : 3859 - 3863
  • [38] Molecular dynamics simulation for the formation of argon clathrate-hydrate structure
    Hirai, S
    Okazaki, K
    Kuraoka, S
    Kawamura, K
    MICROSCALE THERMOPHYSICAL ENGINEERING, 1997, 1 (04): : 293 - 301
  • [39] Molecular dynamics study of the stability of methane structure H clathrate hydrates
    Alavi, Saman
    Ripmeester, J. A.
    Klug, D. D.
    JOURNAL OF CHEMICAL PHYSICS, 2007, 126 (12):
  • [40] Bioreactor Studies and Computational Fluid Dynamics
    Singh, H.
    Hutmacher, D. W.
    BIOREACTOR SYSTEMS FOR TISSUE ENGINEERING, 2009, 112 : 231 - 249