Towards a compendium of essential genes - From model organisms to synthetic lethality in cancer cells

被引:34
作者
Zhan, Tianzuo [1 ,2 ]
Boutros, Michael [1 ]
机构
[1] Heidelberg Univ, German Canc Res Ctr DKFZ, Div Signaling & Funct Genom, Dept Cell & Mol Biol,Med Fac Mannheim, Heidelberg, Germany
[2] Heidelberg Univ, Dept Med 2, Med Fac Mannheim, Univ Hosp Mannheim, Mannheim, Germany
关键词
genetic interaction; Cancer research; essential genes; screening; CRISPR/Cas9; RNAi; synthetic lethality; FUNCTIONAL GENOMIC ANALYSIS; TRANSPORT PROTEIN 4; CAENORHABDITIS-ELEGANS; TARGETED DISRUPTION; INSERTIONAL MUTAGENESIS; ARSENIC TRIOXIDE; ENU MUTAGENESIS; RETINOIC ACID; SIRNA SCREEN; RNAI LIBRARY;
D O I
10.3109/10409238.2015.1117053
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Essential genes are defined by their requirement to sustain life in cells or whole organisms. The systematic identification of essential gene sets not only allows insights into the fundamental building blocks of life, but may also provide novel therapeutic targets in oncology. The discovery of essential genes has been tightly linked to the development and deployment of various screening technologies. Here, we describe how gene essentiality was addressed in different eukaryotic model organisms, covering a range of organisms from yeast to mouse. We describe how increasing knowledge of evolutionarily divergent genomes facilitate identification of gene essentiality across species. Finally, the impact of gene essentiality and synthetic lethality on cancer research and the clinical translation of screening results are highlighted.
引用
收藏
页码:74 / 85
页数:12
相关论文
共 153 条
[1]   The genome sequence of Drosophila melanogaster [J].
Adams, MD ;
Celniker, SE ;
Holt, RA ;
Evans, CA ;
Gocayne, JD ;
Amanatides, PG ;
Scherer, SE ;
Li, PW ;
Hoskins, RA ;
Galle, RF ;
George, RA ;
Lewis, SE ;
Richards, S ;
Ashburner, M ;
Henderson, SN ;
Sutton, GG ;
Wortman, JR ;
Yandell, MD ;
Zhang, Q ;
Chen, LX ;
Brandon, RC ;
Rogers, YHC ;
Blazej, RG ;
Champe, M ;
Pfeiffer, BD ;
Wan, KH ;
Doyle, C ;
Baxter, EG ;
Helt, G ;
Nelson, CR ;
Miklos, GLG ;
Abril, JF ;
Agbayani, A ;
An, HJ ;
Andrews-Pfannkoch, C ;
Baldwin, D ;
Ballew, RM ;
Basu, A ;
Baxendale, J ;
Bayraktaroglu, L ;
Beasley, EM ;
Beeson, KY ;
Benos, PV ;
Berman, BP ;
Bhandari, D ;
Bolshakov, S ;
Borkova, D ;
Botchan, MR ;
Bouck, J ;
Brokstein, P .
SCIENCE, 2000, 287 (5461) :2185-2195
[2]   Identification of 315 genes essential for early zebrafish development [J].
Amsterdam, A ;
Nissen, RM ;
Sun, ZX ;
Swindell, EC ;
Farrington, S ;
Hopkins, N .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (35) :12792-12797
[3]   Cancer-Associated Protein Kinase C Mutations Reveal Kinase's Role as Tumor Suppressor [J].
Antal, Corina E. ;
Hudson, Andrew M. ;
Kang, Emily ;
Zanca, Ciro ;
Wirth, Christopher ;
Stephenson, Natalie L. ;
Trotter, Eleanor W. ;
Gallegos, Lisa L. ;
Miller, Crispin J. ;
Fumari, Frank B. ;
Hunter, Tony ;
Brognard, John ;
Newton, Alexandra C. .
CELL, 2015, 160 (03) :489-502
[4]   Synthetic Lethal Screen of an EGFR-Centered Network to Improve Targeted Therapies [J].
Astsaturov, Igor ;
Ratushny, Vladimir ;
Sukhanova, Anna ;
Einarson, Margret B. ;
Bagnyukova, Tetyana ;
Zhou, Yan ;
Devarajan, Karthik ;
Silverman, Joshua S. ;
Tikhmyanova, Nadezhda ;
Skobeleva, Natalya ;
Pecherskaya, Anna ;
Nasto, Rochelle E. ;
Sharma, Catherine ;
Jablonski, Sandra A. ;
Serebriiskii, Ilya G. ;
Weiner, Louis M. ;
Golemis, Erica A. .
SCIENCE SIGNALING, 2010, 3 (140)
[5]   Oral poly(ADP-ribose) polymerase inhibitor olaparib in patients with BRCA1 or BRCA2 mutations and recurrent ovarian cancer: a proof-of-concept trial [J].
Audeh, M. William ;
Carmichael, James ;
Penson, Richard T. ;
Friedlander, Michael ;
Powell, Bethan ;
Bell-McGuinn, Katherine M. ;
Scott, Clare ;
Weitzel, Jeffrey N. ;
Oaknin, Ana ;
Loman, Niklas ;
Lu, Karen ;
Schmutzler, Rita K. ;
Matulonis, Ursula ;
Wickens, Mark ;
Tutt, Andrew .
LANCET, 2010, 376 (9737) :245-251
[6]   STK33 Kinase Activity Is Nonessential in KRAS-Dependent Cancer Cells [J].
Babij, Carol ;
Zhang, Yihong ;
Kurzeja, Robert J. ;
Munzli, Anke ;
Shehabeldin, Amro ;
Fernando, Manory ;
Quon, Kim ;
Kassner, Paul D. ;
Ruefli-Brasse, Astrid A. ;
Watson, Vivienne J. ;
Fajardo, Flordeliza ;
Jackson, Angela ;
Zondlo, James ;
Sun, Yu ;
Ellison, Aaron R. ;
Plewa, Cherylene A. ;
San Miguel, Tisha ;
Robinson, John ;
McCarter, John ;
Schwandner, Ralf ;
Judd, Ted ;
Carnahan, Josette ;
Dussault, Isabelle .
CANCER RESEARCH, 2011, 71 (17) :5818-5826
[7]   ENU mutagenesis: Analyzing gene function in mice [J].
Balling, R .
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, 2001, 2 :463-492
[8]   Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1 [J].
Barbie, David A. ;
Tamayo, Pablo ;
Boehm, Jesse S. ;
Kim, So Young ;
Moody, Susan E. ;
Dunn, Ian F. ;
Schinzel, Anna C. ;
Sandy, Peter ;
Meylan, Etienne ;
Scholl, Claudia ;
Froehling, Stefan ;
Chan, Edmond M. ;
Sos, Martin L. ;
Michel, Kathrin ;
Mermel, Craig ;
Silver, Serena J. ;
Weir, Barbara A. ;
Reiling, Jan H. ;
Sheng, Qing ;
Gupta, Piyush B. ;
Wadlow, Raymond C. ;
Le, Hanh ;
Hoersch, Sebastian ;
Wittner, Ben S. ;
Ramaswamy, Sridhar ;
Livingston, David M. ;
Sabatini, David M. ;
Meyerson, Matthew ;
Thomas, Roman K. ;
Lander, Eric S. ;
Mesirov, Jill P. ;
Root, David E. ;
Gilliland, D. Gary ;
Jacks, Tyler ;
Hahn, William C. .
NATURE, 2009, 462 (7269) :108-U122
[9]   A SIMPLE AND EFFICIENT METHOD FOR DIRECT GENE DELETION IN SACCHAROMYCES-CEREVISIAE [J].
BAUDIN, A ;
OZIERKALOGEROPOULOS, O ;
DENOUEL, A ;
LACROUTE, F ;
CULLIN, C .
NUCLEIC ACIDS RESEARCH, 1993, 21 (14) :3329-3330
[10]   The BDGP gene disruption project: Single transposon insertions associated with 40% of Drosophila genes [J].
Bellen, HJ ;
Levis, RW ;
Liao, GC ;
He, YC ;
Carlson, JW ;
Tsang, G ;
Evans-Holm, M ;
Hiesinger, PR ;
Schulze, KL ;
Rubin, GM ;
Hoskins, RA ;
Spradling, AC .
GENETICS, 2004, 167 (02) :761-781