Fungal communities in Scandinavian lakes along a longitudinal gradient

被引:39
作者
Khomich, Maryia [1 ,2 ]
Davey, Marie L. [2 ]
Kauserud, Havard [2 ]
Rasconi, Serena [3 ]
Andersen, Tom [1 ]
机构
[1] Univ Oslo, Dept Biosci, Sect Aquat Biol & Toxicol, POB 1066 Blindern, N-0316 Oslo, Norway
[2] Univ Oslo, Dept Biosci, Sect Genet & Evolutionary Biol, POB 1066 Blindern, N-0316 Oslo, Norway
[3] Interuniv Ctr Aquat Ecosyst Res, WasserCluster Biol Stn Lunz, A-3293 Lunz Am See, Austria
关键词
Aquatic fungi; Chytridiomycota; ITS region; Freshwater; Diversity; 454; pyrosequencing; FRESH-WATER FUNGI; MOLECULAR PHYLOGENY; MARINE FUNGI; SP-NOV; DIVERSITY; PHYTOPLANKTON; ECOLOGY; CHYTRIDIOMYCOTA; CLASSIFICATION; IDENTIFICATION;
D O I
10.1016/j.funeco.2017.01.008
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
This study investigates the diversity and distribution of fungal communities in 77 oligotrophic lakes in southern Norway and Sweden using 454-sequencing with fungal-specific primers targeting ITS2 region of the rRNA gene. A total of 232 operational taxonomic units (OTUs) belonging to four recognized phyla were detected. A large proportion (70.69%) of the detected OTUs were Dikarya (Ascomycota and Basidiomycota), while Chytridiomycota dominated quantitatively (63.37% reads). The most abundant aquatic fungi were taxonomically assigned to Chytridiomycota, whose members are known to be saprobes on a large variety of substrates and parasites of phytoplankton, zooplankton, fungi and invertebrates, suggesting that resident fungi strictly depend on surfaces and, therefore, are closely associated with other types of aquatic organisms. Our results indicate that surface waters of oligotrophic lakes harbour a diverse pool of fungi, both with tentative terrestrial and true aquatic origin. Longitude and environmental factors were important in structuring the fungal community composition. (C) 2017 Elsevier Ltd and British Mycological Society. All rights reserved.
引用
收藏
页码:36 / 46
页数:11
相关论文
共 111 条
[1]   From Dandruff to Deep-Sea Vents: Malassezia-like Fungi Are Ecologically Hyper-diverse [J].
Amend, Anthony .
PLOS PATHOGENS, 2014, 10 (08)
[2]   Aquatic hyphomycetes in a changing environment [J].
Baerlocher, F. .
FUNGAL ECOLOGY, 2016, 19 :14-27
[3]   Aquatic fungal ecology - How does it differ from terrestrial? [J].
Baerlocher, Felix ;
Boddy, Lynne .
FUNGAL ECOLOGY, 2016, 19 :5-13
[4]   Yeast forms dominate fungal diversity in the deep oceans [J].
Bass, David ;
Howe, Alexis ;
Brown, Nick ;
Barton, Hannah ;
Demidova, Maria ;
Michelle, Harlan ;
Li, Lily ;
Sanders, Holly ;
Watkinson, Sarah C. ;
Willcock, Simon ;
Richards, Thomas A. .
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2007, 274 (1629) :3069-3077
[5]   Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data [J].
Bengtsson-Palme, Johan ;
Ryberg, Martin ;
Hartmann, Martin ;
Branco, Sara ;
Wang, Zheng ;
Godhe, Anna ;
De Wit, Pierre ;
Sanchez-Garcia, Marisol ;
Ebersberger, Ingo ;
de Sousa, Filipe ;
Amend, Anthony S. ;
Jumpponen, Ari ;
Unterseher, Martin ;
Kristiansson, Erik ;
Abarenkov, Kessy ;
Bertrand, Yann J. K. ;
Sanli, Kemal ;
Eriksson, K. Martin ;
Vik, Unni ;
Veldre, Vilmar ;
Nilsson, R. Henrik .
METHODS IN ECOLOGY AND EVOLUTION, 2013, 4 (10) :914-919
[6]   Estimating Bacterial Diversity for Ecological Studies: Methods, Metrics, and Assumptions [J].
Birtel, Julia ;
Walser, Jean-Claude ;
Pichon, Samuel ;
Buergmann, Helmut ;
Matthews, Blake .
PLOS ONE, 2015, 10 (04)
[7]   Changes in the root-associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing [J].
Blaalid, Rakel ;
Carlsen, Tor ;
Kumar, Surendra ;
Halvorsen, Rune ;
Ugland, Karl Inne ;
Fontana, Giovanni ;
Kauserud, Havard .
MOLECULAR ECOLOGY, 2012, 21 (08) :1897-1908
[8]   Low host specificity of root-associated fungi at an Arctic site [J].
Botnen, Synnove ;
Vik, Unni ;
Carlsen, Tor ;
Eidesen, Pernille B. ;
Davey, Marie L. ;
Kauserud, Havard .
MOLECULAR ECOLOGY, 2014, 23 (04) :975-985
[9]   Analyses of ITS and LSU gene regions provide congruent results on fungal community responses [J].
Brown, Shawn P. ;
Rigdon-Huss, Anne R. ;
Jumpponen, An .
FUNGAL ECOLOGY, 2014, 9 :65-68
[10]   454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity [J].
Buee, M. ;
Reich, M. ;
Murat, C. ;
Morin, E. ;
Nilsson, R. H. ;
Uroz, S. ;
Martin, F. .
NEW PHYTOLOGIST, 2009, 184 (02) :449-456