DNA sequences from mobile genetic elements, a hidden half of the human genome

被引:8
作者
Medina, Julie [1 ]
Perron, Herve [1 ,2 ,3 ]
机构
[1] GeNeuro Innovat, Bioparc Laennec,60,Ave Rockefeller, F-69008 Lyon, France
[2] GeNeuro, 18 Chemin Aulx,1228 Plan Les Ouates, Geneva, Switzerland
[3] Univ Lyon 1, Fac Med Laennec, F-69008 Lyon, France
来源
M S-MEDECINE SCIENCES | 2017年 / 33卷 / 02期
关键词
HUMAN ENDOGENOUS RETROVIRUSES; HUMAN-POPULATIONS; MAMMARY-TUMOR; W ELEMENTS; INSERTIONS; EVOLUTION; DISEASE; ENDOGENIZATION; CLASSIFICATION; EXPRESSION;
D O I
10.1051/medsci/20173302010
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
Current data estimate that mobile genetic elements represent more than one-half of the human genome. The literature is constantly updating data following the evolution of sequencing techniques and of algorithms for genome analyses. This review aims to provide an overview of the topic showing the complexity given by the various designations and classifications found in scientific papers. A particular focus is made on retrotransposons, including Endogenous RetroViruses (ERV), to introduce a second article focusing on their activation and their involvement in physiological functions and/or pathological mechanisms associated with diseases like multiple sclerosis (MS) or amyotrophic lateral sclerosis (ALS).
引用
收藏
页码:151 / 158
页数:8
相关论文
共 41 条
  • [1] High copy number in human endogenous retrovirus families is associated with copying mechanisms in addition to reinfection
    Belshaw, R
    Katzourakis, A
    Paces, J
    Burt, A
    Tristem, M
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2005, 22 (04) : 814 - 817
  • [2] Viral Particles of Endogenous Betaretroviruses Are Released in the Sheep Uterus and Infect the Conceptus Trophectoderm in a Transspecies Embryo Transfer Model
    Black, Sarah G.
    Arnaud, Frederick
    Burghardt, Robert C.
    Satterfield, M. Carey
    Fleming, Jo-Ann G. W.
    Long, Charles R.
    Hanna, Carol
    Murphy, Lita
    Biek, Roman
    Palmarini, Massimo
    Spencer, Thomas E.
    [J]. JOURNAL OF VIROLOGY, 2010, 84 (18) : 9078 - 9085
  • [3] Classification and nomenclature of endogenous retroviral sequences (ERVs): Problems and recommendations
    Blomberg, Jonas
    Benachenhou, Farid
    Blikstad, Vidar
    Sperber, Goran
    Mayer, Jens
    [J]. GENE, 2009, 448 (02) : 115 - 123
  • [4] Comprehensively identifying and characterizing the missing gene sequences in human reference genome with integrated analytic approaches
    Chen, Geng
    Wang, Charles
    Shi, Leming
    Tong, Weida
    Qu, Xiongfei
    Chen, Jiwei
    Yang, Jianmin
    Shi, Caiping
    Chen, Long
    Zhou, Peiying
    Lu, Bingxin
    Shi, Tieliu
    [J]. HUMAN GENETICS, 2013, 132 (08) : 899 - 911
  • [5] Revealing the missing expressed genes beyond the human reference genome by RNA-Seq
    Chen, Geng
    Li, Ruiyuan
    Shi, Leming
    Qi, Junyi
    Hu, Pengzhan
    Luo, Jian
    Liu, Mingyao
    Shi, Tieliu
    [J]. BMC GENOMICS, 2011, 12
  • [6] Evolution and gene capture in ancient endogenous retroviruses - insights from the crocodilian genomes
    Chong, Amanda Y.
    Kojima, Kenji K.
    Jurka, Jerzy
    Ray, David A.
    Smit, Arian F. A.
    Isberg, Sally R.
    Gongora, Jaime
    [J]. RETROVIROLOGY, 2014, 11
  • [7] Cloyd MW, 1996, MED MICROBIOLOGY
  • [8] HIV infection en route to endogenization: two cases
    Colson, P.
    Ravaux, I.
    Tamalet, C.
    Glazunova, O.
    Baptiste, E.
    Chabriere, E.
    Wiedemann, A.
    Lacabaratz, C.
    Chefrour, M.
    Picard, C.
    Stein, A.
    Levy, Y.
    Raoult, D.
    [J]. CLINICAL MICROBIOLOGY AND INFECTION, 2014, 20 (12) : 1280 - 1288
  • [9] Endogenization of mouse mammary tumor virus (MMTV)-like elements in genomes of pikas (Ochotona sp.)
    de Matos, Ana Lemos
    de Sousa-Pereira, Patricia
    Lissovsky, Andrey A.
    van der Loo, Wessel
    Melo-Ferreira, Jose
    Cui, Jie
    Esteves, Pedro J.
    [J]. VIRUS RESEARCH, 2015, 210 : 22 - 26
  • [10] Koala retroviruses: characterization and impact on the life of koalas
    Denner, Joachim
    Young, Paul R.
    [J]. RETROVIROLOGY, 2013, 10