Cloning and sequencing alleles of the KIR2DL4 gene from genomic DNA samples

被引:6
作者
Roberts, C. H.
Madrigal, J. A.
Marsh, S. G. E. [1 ]
机构
[1] UCL Royal Free & Univ Coll Med Sch, Anthony Nolan Res Inst, London, England
[2] UCL Royal Free & Univ Coll Med Sch, Dept Haematol, London, England
来源
TISSUE ANTIGENS | 2007年 / 69卷
关键词
killer-cell immunoglobulin-like receptor; KIR2DL4; molecular cloning; polymorphism;
D O I
10.1111/j.1399-0039.2006.762_2.x
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Killer-cell immunoglobulin-like receptor (KIR) genes are highly polymorphic and polymorphisms have been found in all KIR exons. Although less is known of the introns, these also appear to be polymorphic. To generate a comprehensive database of KIR genomic sequences, which will aid in the design of KIR typing reagents, we have established a method for cloning and sequencing of KIR genes from genomic DNA. We cloned and sequenced the entire KIR2DL4 gene from genomic DNA using long template touchdown PCR and high capacity cloning vectors. Overlapping secondary amplicons were modified to include a nucleotide analogue that reduced sequencing problems associated with secondary structure formation in the KIR sequence. Using a modified sequencing chemistry we were able to sequence approximately 11,000 bases confirming the previously published KIR2DL4*005 allele sequence.
引用
收藏
页码:88 / 91
页数:4
相关论文
共 11 条
[1]   EFFECTIVE AMPLIFICATION OF LONG TARGETS FROM CLONED INSERTS AND HUMAN GENOMIC DNA [J].
CHENG, S ;
FOCKLER, C ;
BARNES, WM ;
HIGUCHI, R .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1994, 91 (12) :5695-5699
[2]   TOUCHDOWN PCR TO CIRCUMVENT SPURIOUS PRIMING DURING GENE AMPLIFICATION [J].
DON, RH ;
COX, PT ;
WAINWRIGHT, BJ ;
BAKER, K ;
MATTICK, JS .
NUCLEIC ACIDS RESEARCH, 1991, 19 (14) :4008-4008
[3]  
Fernandez-Rachubinski F, 1990, DNA Seq, V1, P137, DOI 10.3109/10425179009016041
[4]   Human KIR sequences 2003 [J].
Garcia, CA ;
Robinson, J ;
Guethlein, LA ;
Parham, P ;
Madrigal, JA ;
Marsh, SGE .
IMMUNOGENETICS, 2003, 55 (04) :227-239
[5]  
GARCIA CA, IN PRESS IMMUNOBIOLO
[6]   Genomic characterization of KIR2DL4 in families and unrelated individuals reveals extensive diversity in exon and intron sequences including a common frameshift variation occurring in several alleles [J].
Gedil, MA ;
Steiner, NK ;
Hurley, CK .
TISSUE ANTIGENS, 2005, 65 (05) :402-418
[7]   Killer-cell immunoglobulin-like receptor (KIR) nomenclature report, 2002 [J].
Marsh, SGE ;
Parham, P ;
Dupont, B ;
Geraghty, DE ;
Trowsdale, J ;
Middleton, D ;
Vilches, C ;
Carrington, M ;
Witt, C ;
Guethlein, LA ;
Shilling, H ;
Garcia, CA ;
Hsu, KC ;
Wain, H .
TISSUE ANTIGENS, 2003, 62 (01) :79-86
[8]   Cutting edge:: Expansion of the KIR locus by unequal crossing over [J].
Martin, MP ;
Bashirova, A ;
Traherne, J ;
Trowsdale, J ;
Carrington, M .
JOURNAL OF IMMUNOLOGY, 2003, 171 (05) :2192-2195
[9]   A SIMPLE SALTING OUT PROCEDURE FOR EXTRACTING DNA FROM HUMAN NUCLEATED CELLS [J].
MILLER, SA ;
DYKES, DD ;
POLESKY, HF .
NUCLEIC ACIDS RESEARCH, 1988, 16 (03) :1215-1215
[10]   Evidence for recombination as a mechanism for KIR diversification [J].
Shilling, HG ;
Lienert-Weidenbach, K ;
Valiante, NM ;
Uhrberg, M ;
Parham, P .
IMMUNOGENETICS, 1998, 48 (06) :413-416