The complete mitochondrial genome of the dusky-footed woodrat (Neotoma fuscipes) (Rodentia, Cricetidae)

被引：2
作者：
Brown, Sarah K. [1 ]
Blois, Jessica L. [1 ]
机构：
[1] Univ Calif Merced, Life & Environm Sci, Sch Nat Sci, Merced, CA 95340 USA
来源：
MITOCHONDRIAL DNA PART B-RESOURCES | 2016年 / 1卷 / 01期
关键词：
Mitochondrial genome; Neotoma fuscipes; cricetidae; DNA-SEQUENCES; ANNOTATION;
D O I：
10.1080/23802359.2016.1233464
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
The dusky-footed woodrat (Neotoma fuscipes) is an endemic North American rodent belonging to the family Cricetidae. We present here the first complete mitogenome within the Neotoma genus. The mitogenome is 16,199 bp in length, and has a structure and gene organization similar to other rodent species (e.g. Mus musculus, Peromyscus maniculatus and Microtus fortis calamorum). The overall base composition is A (35.2%), C (25.5%), G (12.3%), T (27.0%), with a GC content of 37.8%, similar to other rodents. This mitogenome serves as a foundation for future phylogenetic, phylogeographic and population genetic studies.
引用
收藏
页码：728 / 729
页数：2
相关论文
共 13 条
  • [1] [Anonymous], 1999, WALKERS MAMMALS WORL
  • [2] MITOS: Improved de novo metazoan mitochondrial genome annotation
    Bernt, Matthias
    Donath, Alexander
    Juehling, Frank
    Externbrink, Fabian
    Florentz, Catherine
    Fritzsch, Guido
    Puetz, Joern
    Middendorf, Martin
    Stadler, Peter F.
    [J]. MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 69 (02) : 313 - 319
  • [3] Betancourt JL., 1990, PACKRAT MIDDENS
  • [4] Phylogenetic relationships of neotomineperomyscine rodents:: Based on DNA sequences from the mitochondrial cytochrome-b gene
    Bradley, RD
    Edwards, CW
    Carroll, DS
    Kilpatrick, CW
    [J]. JOURNAL OF MAMMALOGY, 2004, 85 (03) : 389 - 395
  • [5] In-solution hybridization for mammalian mitogenome enrichment: pros, cons and challenges associated with multiplexing degraded DNA
    Hawkins, Melissa T. R.
    Hofman, Courtney A.
    Callicrate, Taylor
    McDonough, Molly M.
    Tsuchiya, Mirian T. N.
    Gutierrez, Eliecer E.
    Helgen, Kristofer M.
    Maldonado, Jesus E.
    [J]. MOLECULAR ECOLOGY RESOURCES, 2016, 16 (05) : 1173 - 1188
  • [6] The Sequence Alignment/Map format and SAMtools
    Li, Heng
    Handsaker, Bob
    Wysoker, Alec
    Fennell, Tim
    Ruan, Jue
    Homer, Nils
    Marth, Gabor
    Abecasis, Goncalo
    Durbin, Richard
    [J]. BIOINFORMATICS, 2009, 25 (16) : 2078 - 2079
  • [7] Fast and accurate short read alignment with Burrows-Wheeler transform
    Li, Heng
    Durbin, Richard
    [J]. BIOINFORMATICS, 2009, 25 (14) : 1754 - 1760
  • [8] tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    Lowe, TM
    Eddy, SR
    [J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (05) : 955 - 964
  • [9] The complete nucleotide sequence of Chinese hamster (Cricetulus griseus) mitochondrial DNA
    Partridge, Michael A.
    Davidson, Mercy M.
    Hei, Tom K.
    [J]. DNA SEQUENCE, 2007, 18 (05): : 341 - 346
  • [10] Neotomine-peromyscine rodent systematics based on combined analyses of nuclear and mitochondrial DNA sequences
    Reeder, Serena A.
    Carroll, Darin S.
    Edwards, Cody W.
    Kilpatrick, C. William
    Bradley, Robert D.
    [J]. MOLECULAR PHYLOGENETICS AND EVOLUTION, 2006, 40 (01) : 251 - 258
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