Estimation of individual binding energies in some dimers involving multiple hydrogen bonds using topological properties of electron charge density

被引:37
作者
Ebrahimi, A. [1 ]
Khorassani, S. M. Habibi [1 ]
Delarami, H. [1 ]
机构
[1] Univ Sistan & Baluchestan, Dept Chem, Zahedan, Iran
关键词
Individual hydrogen bond; Electron density; Atoms in molecules; Adenine-thymine; Guanine-cytosine; CYTOSINE BASE-PAIRS; CENTER-DOT-O; AB-INITIO; ADENINE-THYMINE; STRENGTH; COMPLEXES; DNA; STACKING; BACKBONE; FIDELITY;
D O I
10.1016/j.chemphys.2009.09.013
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Individual hydrogen bond (HB) energies have been estimated in several systems involving multiple HBs such as adenine-thymine and guanine-cytosine using electron charge densities calculated at X center dot center dot center dot H hydrogen bond critical points (HBCPs) by atoms in molecules (AIM) method at B3LYP/6-311++G** and MP2/6-311++G** levels. A symmetrical system with two identical H bonds has been selected to search for simple relations between rho(HBCP) and individual E-HB. Correlation coefficient between E-HB and rho(HBCP) in the base of linear, quadratic, and exponential equations are acceptable and equal to 0.95. The estimated individual binding energies E-HB are in good agreement with the results of atom-replacement approach and natural bond orbital analysis (NBO). The E-HB values estimated from rho values at H center dot center dot center dot X BCP are in satisfactory agreement with the main geometrical parameter H center dot center dot center dot X. With respect to the obtained individual binding energies, the strength of a HB depends on the substituent and the cooperative effects of other HBs. (C) 2009 Elsevier B.V. All rights reserved.
引用
收藏
页码:18 / 23
页数:6
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