Direct evidence for a dry molten globule intermediate during the unfolding of a small protein

被引:114
作者
Jha, Santosh Kumar [1 ]
Udgaonkar, Jayant B. [1 ]
机构
[1] Tata Inst Fundamental Res, Natl Ctr Biol Sci, Bangalore 560065, Karnataka, India
关键词
continuous transition; protein unfolding; single chain monellin; steady-state FRET; SINGLE-CHAIN MONELLIN; INTRAMOLECULAR DISTANCES; COOPERATIVE TRANSITIONS; PHASE-TRANSITION; ENERGY-TRANSFER; RIBONUCLEASE-A; ALPHA-HELICES; BARSTAR; DENATURATION; FORM;
D O I
10.1073/pnas.0905744106
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Little is known about how proteins begin to unfold. In particular, how and when water molecules penetrate into the protein interior during unfolding, thereby enabling the dissolution of specific structure, is poorly understood. The hypothesis that the native state expands initially into a dry molten globule, in which tight packing interactions are broken, but whose hydrophobic core has not expanded sufficiently to be able to absorb water molecules, has very little experimental support. Here, we report our analysis of the earliest observable events during the unfolding of single chain monellin (MNEI), a small plant protein. Far- and near-UV circular dichroism measurements of GdnHCl-induced unfolding indicate that a molten globule intermediate forms initially, before the major slow unfolding reaction commences. Steady-state fluorescence resonance energy transfer measurements show that the C-terminal end of the single helix of MNEI initially moves rapidly away from the single tryptophan residue that is close to the N-terminal end of the helix. The average end-to-end distance of the protein also expands during unfolding to the molten globule intermediate. At this time, water has yet to penetrate the protein core, according to the evidence from intrinsic tryptophan fluorescence and 8-anilino-1-naphthalenesulfonic acid fluorescence-monitored kinetic unfolding measurements. Our results therefore provide direct evidence for a dry molten globule intermediate at the initial stage of unfolding. Our results further suggest that the structural transition between the native and dry molten globule states could be an all-or-none transition, whereas further swelling of the globule appears to occur gradually.
引用
收藏
页码:12289 / 12294
页数:6
相关论文
共 42 条
[1]   Temperature-de pendent downhill unfolding of ubiquitin. II. Modeling the free energy surface [J].
Chung, Hoi Sung ;
Tokmakoff, Andrei .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2008, 72 (01) :488-497
[2]   DOMINANT FORCES IN PROTEIN FOLDING [J].
DILL, KA .
BIOCHEMISTRY, 1990, 29 (31) :7133-7155
[3]   Local conformational dynamics in α-helices measured by fast triplet transfer [J].
Fierz, Beat ;
Reiner, Andreas ;
Kiefhaber, Thomas .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (04) :1057-1062
[4]   THEORY OF COOPERATIVE TRANSITIONS IN PROTEIN MOLECULES .2. PHASE-DIAGRAM FOR A PROTEIN MOLECULE IN SOLUTION [J].
FINKELSTEIN, AV ;
SHAKHNOVICH, EI .
BIOPOLYMERS, 1989, 28 (10) :1681-1694
[5]  
FINKELSTEIN AV, 2002, PROTEIN PHYS, P205
[6]   Experimental identification of downhill protein folding [J].
Garcia-Mira, MM ;
Sadqi, M ;
Fischer, N ;
Sanchez-Ruiz, JM ;
Muñoz, V .
SCIENCE, 2002, 298 (5601) :2191-2195
[7]   Computational simulation of the statistical properties of unfolded proteins [J].
Goldenberg, DP .
JOURNAL OF MOLECULAR BIOLOGY, 2003, 326 (05) :1615-1633
[8]   STOPPED-FLOW NMR-SPECTROSCOPY - REAL-TIME UNFOLDING STUDIES OF 6-F-19-TRYPTOPHAN-LABELED ESCHERICHIA-COLI DIHYDROFOLATE-REDUCTASE [J].
HOELTZLI, SD ;
FRIEDEN, C .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (20) :9318-9322
[9]   Urea denaturation by stronger dispersion interactions with proteins than water implies a 2-stage unfolding [J].
Hua, Lan ;
Zhou, Ruhong ;
Thirumalai, D. ;
Berne, B. J. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (44) :16928-16933
[10]   Fluorescence resonance energy transfer analysis of the folding pathway of Engrailed Homeodomain [J].
Huang, Fang ;
Settanni, Giovanni ;
Fersht, Alan R. .
PROTEIN ENGINEERING DESIGN & SELECTION, 2008, 21 (03) :131-146