Label-free SERS detection of proteins based on machine learning classification of chemo-structural determinants

被引:59
作者
Barucci, Andrea [1 ]
D'Andrea, Cristiano [1 ]
Farnesi, Edoardo [1 ]
Banchelli, Martina [1 ]
Amicucci, Chiara [1 ]
de Angelis, Marella [1 ]
Hwang, Byungil [2 ]
Matteini, Paolo [1 ]
机构
[1] Italian Natl Res Council, Inst Appl Phys Nello Carrara, Via Madonna Piano 10, I-50019 Sesto Fiorentino, Italy
[2] Chung Ang Univ, Sch Integrat Engn, Seoul 06974, South Korea
基金
新加坡国家研究基金会;
关键词
ENHANCED RAMAN-SPECTROSCOPY; SCATTERING;
D O I
10.1039/d0an02137g
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
Establishing standardized methods for a consistent analysis of spectral data remains a largely underexplored aspect in surface-enhanced Raman spectroscopy (SERS), particularly applied to biological and biomedical research. Here we propose an effective machine learning classification of protein species with closely resembled spectral profiles by a mixed data processing based on principal component analysis (PCA) applied to multipeak fitting on SERS spectra. This strategy simultaneously assures a successful discrimination of proteins and a thorough characterization of the chemostructural differences among them, ultimately opening up new routes for SERS evolution toward sensing applications and diagnostics of interest in life sciences.
引用
收藏
页码:674 / 682
页数:9
相关论文
共 37 条
[1]   Surface-Enhanced Raman Scattering-Based Detection of the Interactions between the Essential Cell Division FtsZ Protein and Bacterial Membrane Elements [J].
Ahijado-Guzman, Ruben ;
Gomez-Puertas, Paulino ;
Alvarez-Puebla, Ramon A. ;
Rivas, German ;
Liz-Marzan, Luis M. .
ACS NANO, 2012, 6 (08) :7514-7520
[2]   Nanoscopic insights into the surface conformation of neurotoxic amyloid β oligomers [J].
Banchelli, Martina ;
Cascella, Roberta ;
D'Andrea, Cristiano ;
Cabaj, Leszek ;
Osticioli, Iacopo ;
Ciofini, Daniele ;
Li, Mai Suan ;
Skupien, Krzysztof ;
de Angelis, Marella ;
Siano, Salvatore ;
Cecchi, Cristina ;
Pini, Roberto ;
La Penna, Giovanni ;
Chiti, Fabrizio ;
Matteini, Paolo .
RSC ADVANCES, 2020, 10 (37) :21907-21913
[3]   Spot-on SERS Detection of Biomolecules with Laser-Patterned Dot Arrays of Assembled Silver Nanowires [J].
Banchelli, Martina ;
Amicucci, Chiara ;
Ruggiero, Emmanuel ;
D'Andrea, Cristiano ;
Cottat, Maximilien ;
Ciofini, Daniele ;
Osticioli, Iacopo ;
Ghini, Giacomo ;
Siano, Salvatore ;
Pini, Roberto ;
de Angelis, Marella ;
Matteini, Paolo .
CHEMNANOMAT, 2019, 5 (08) :1036-1043
[4]   Controlled Veiling of Silver Nanocubes with Graphene Oxide for Improved Surface-Enhanced Raman Scattering Detection [J].
Banchelli, Martina ;
Tiribilli, Bruno ;
de Angelis, Marella ;
Pini, Roberto ;
Caminati, Gabriella ;
Matteini, Paolo .
ACS APPLIED MATERIALS & INTERFACES, 2016, 8 (04) :2628-2634
[5]   SERS analysis of serum for detection of early and locally advanced breast cancer [J].
Cervo, Silvia ;
Mansutti, Elena ;
Del Mistro, Greta ;
Spizzo, Riccardo ;
Colombatti, Alfonso ;
Steffan, Agostino ;
Sergo, Valter ;
Bonifacio, Alois .
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2015, 407 (24) :7503-7509
[6]   Recent progress in surface-enhanced Raman spectroscopy for biological and biomedical applications: from cells to clinics [J].
Cialla-May, D. ;
Zheng, X. -S. ;
Weber, K. ;
Popp, J. .
CHEMICAL SOCIETY REVIEWS, 2017, 46 (13) :3945-3961
[7]   Using Surface Enhanced Raman Scattering to Analyze the Interactions of Protein Receptors with Bacterial Quorum Sensing Modulators [J].
Costas, Celina ;
Lopez-Puente, Vanesa ;
Bodelon, Gustavo ;
Gonzalez-Bello, Concepcion ;
Perez-Juste, Jorge ;
Pastoriza-Santos, Isabel ;
Liz-Marzan, Luis M. .
ACS NANO, 2015, 9 (05) :5567-5576
[8]   Nanoscale Discrimination between Toxic and Nontoxic Protein Misfolded Oligomers with Tip-Enhanced Raman Spectroscopy [J].
D'Andrea, Cristiano ;
Foti, Antonino ;
Cottat, Maximilien ;
Banchelli, Martina ;
Capitini, Claudia ;
Barreca, Francesco ;
Canale, Claudio ;
de Angelis, Marella ;
Relini, Annalisa ;
Marago, Onofrio M. ;
Pini, Roberto ;
Chiti, Fabrizio ;
Gucciardi, Pietro G. ;
Matteini, Paolo .
SMALL, 2018, 14 (36)
[9]   Biosensor surface functionalization by a simple photochemical immobilization of antibodies: experimental characterization by mass spectrometry and surface enhanced Raman spectroscopy [J].
Della Ventura, Bartolomeo ;
Banchelli, Martina ;
Funari, Riccardo ;
Illiano, Anna ;
De Angelis, Marella ;
Taroni, Paola ;
Amoresano, Angela ;
Matteini, Paolo ;
Velotta, Raffaele .
ANALYST, 2019, 144 (23) :6871-6880
[10]   SERS detection of Biomolecules at Physiological pH via aggregation of Gold Nanorods mediated by Optical Forces and Plasmonic Heating [J].
Fazio, Barbara ;
D'Andrea, Cristiano ;
Foti, Antonino ;
Messina, Elena ;
Irrera, Alessia ;
Donato, Maria Grazia ;
Villari, Valentina ;
Micali, Norberto ;
Marago, Onofrio M. ;
Gucciardi, Pietro G. .
SCIENTIFIC REPORTS, 2016, 6