Machine-learning-based diagnostics of EEG pathology

被引:115
作者
Gemein, Lukas A. W. [1 ,2 ,3 ]
Schirrmeister, Robin T. [1 ,2 ]
Chrabaszcz, Patryk [1 ,2 ]
Wilson, Daniel [1 ]
Boedecker, Joschka [3 ]
Schulze-Bonhage, Andreas [4 ]
Hutter, Frank [2 ]
Ball, Tonio [1 ,4 ]
机构
[1] Univ Freiburg, Med Ctr, Fac Med, Neuromed AI Lab,Dept Neurosurg, Engelbergerstr 21, D-79106 Freiburg, Germany
[2] Univ Freiburg, Comp Sci Dept, Fac Engn, Machine Learning Lab, Georges Kohler Allee 74, D-79110 Freiburg, Germany
[3] Univ Freiburg, Comp Sci Dept, Fac Engn, Neurorobot Lab, Georges Kohler Allee 80, D-79110 Freiburg, Germany
[4] Univ Freiburg, Med Ctr, Fac Med, Dept Neurosurg,Freiburg Epilepsy Ctr, Breisacher Str 64, D-79106 Freiburg, Germany
关键词
Machine learning; Deep learning; Electroencephalography; EEG; Diagnostics; Pathology; Features; Riemannian geometry; Convolutional neural networks; DEEP NEURAL-NETWORKS; BRAIN ACTIVITY; CLASSIFICATION; RECOGNITION; QUANTIFICATION; RELIABILITY; COMPLEXITY; EPILEPSY; SEIZURES; KERNEL;
D O I
10.1016/j.neuroimage.2020.117021
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
Machine learning (ML) methods have the potential to automate clinical EEG analysis. They can be categorized into feature-based (with handcrafted features), and end-to-end approaches (with learned features). Previous studies on EEG pathology decoding have typically analyzed a limited number of features, decoders, or both. For a I) more elaborate feature-based EEG analysis, and II) in-depth comparisons of both approaches, here we first develop a comprehensive feature-based framework, and then compare this framework to state-of-the-art end-to-end methods. To this aim, we apply the proposed feature-based framework and deep neural networks including an EEG-optimized temporal convolutional network (TCN) to the task of pathological versus non-pathological EEG classification. For a robust comparison, we chose the Temple University Hospital (TUH) Abnormal EEG Corpus (v2.0.0), which contains approximately 3000 EEG recordings. The results demonstrate that the proposed featurebased decoding framework can achieve accuracies on the same level as state-of-the-art deep neural networks. We find accuracies across both approaches in an astonishingly narrow range from 81 to 86%. Moreover, visualizations and analyses indicated that both approaches used similar aspects of the data, e.g., delta and theta band power at temporal electrode locations. We argue that the accuracies of current binary EEG pathology decoders could saturate near 90% due to the imperfect inter-rater agreement of the clinical labels, and that such decoders are already clinically useful, such as in areas where clinical EEG experts are rare. We make the proposed feature-based framework available open source and thus offer a new tool for EEG machine learning research.
引用
收藏
页数:16
相关论文
共 95 条
[1]   Automatic EEG processing for the early diagnosis of Traumatic Brain Injury [J].
Albert, Bruno ;
Zhang, Jingjing ;
Noyvirt, Alexandre ;
Setchi, Rossitza ;
Sjaaheim, Haldor ;
Velikova, Svetla ;
Strisland, Frode .
KNOWLEDGE-BASED AND INTELLIGENT INFORMATION & ENGINEERING SYSTEMS: PROCEEDINGS OF THE 20TH INTERNATIONAL CONFERENCE KES-2016, 2016, 96 :703-712
[2]   EEG Pathology Detection Based on Deep Learning [J].
Alhussein, Musaed ;
Muhammad, Ghulam ;
Hossain, M. Shamim .
IEEE ACCESS, 2019, 7 :27781-27788
[3]   Permutation importance: a corrected feature importance measure [J].
Altmann, Andre ;
Tolosi, Laura ;
Sander, Oliver ;
Lengauer, Thomas .
BIOINFORMATICS, 2010, 26 (10) :1340-1347
[4]   Cognitive Smart Healthcare for Pathology Detection and Monitoring [J].
Amin, Syed Umar ;
Hossain, M. Shamim ;
Muhammad, Ghulam ;
Alhussein, Musaed ;
Rahman, Md Abdur .
IEEE ACCESS, 2019, 7 :10745-10753
[5]  
Ang KK, 2008, IEEE IJCNN, P2390, DOI 10.1109/IJCNN.2008.4634130
[6]  
[Anonymous], 2017, ARXIV170808012
[7]  
Bai S., 2018, An Empirical Evaluation of Generic Convolutional and Recurrent Networks for Sequence Modeling
[8]  
Balli T, 2009, I IEEE EMBS C NEUR E, P707
[9]   Classification of covariance matrices using a Riemannian-based kernel for BCI applications [J].
Barachant, Alexandre ;
Bonnet, Stephane ;
Congedo, Marco ;
Jutten, Christian .
NEUROCOMPUTING, 2013, 112 :172-178
[10]  
Biswal S, 2017, ARXIV170708262