Future challenges with DNA-encoded chemical libraries in the drug discovery domain

被引:73
作者
Zhao, Guixian [1 ]
Huang, Yiran [2 ]
Zhou, Yu [2 ,3 ]
Li, Yizhou [1 ]
Li, Xiaoyu [2 ]
机构
[1] Chongqing Univ, Tumour Targeted Therapy & Chem Biol Res Ctr, Sch Pharmaceut Sci, Chongqing, Peoples R China
[2] Univ Hong Kong, Dept Chem, Pokfulam Rd, Hong Kong, Peoples R China
[3] Peking Univ, Sch Chem Biol & Biotechnol, Key Lab Chem Genom, Shenzhen Grad Sch, Shenzhen, Peoples R China
关键词
DNA-encoded chemical library; drug discovery; high throughput screening; combinatorial chemistry; drug targets; TEMPLATED ORGANIC-SYNTHESIS; SOLID-PHASE SYNTHESIS; LIGAND-TARGET PAIRS; IN-VITRO SELECTION; SMALL MOLECULES; IDENTIFICATION; TECHNOLOGY; DISPLAY; AFFINITY; DESIGN;
D O I
10.1080/17460441.2019.1614559
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Introduction: DNA-encoded chemical libraries (DELs) have come of age and emerged to become a powerful technology platform for ligand discovery in biomedical research and drug discovery. Today, DELs have been widely adopted in the pharmaceutical industry and employed in drug discovery programs worldwide. DELs are capable of interrogating drug targets with an extremely large number of compounds highly efficiently. Area covered: In this review, the authors introduce the history of DELs and provide an overview of the major technological components, including encoding methods, library synthesis, chemistry, selection methods, hit deconvolution strategy, and post-selection data analysis. A brief update on the hit compounds recently discovered from DEL selections against drug targets is also provided. Finally, the authors discuss their views on the present challenges and future directions for the development and application of DELs in drug discovery. Expert opinion: DELs have provided great opportunities for lead compound discovery at an unprecedented scale and efficiency in drug discovery. The key to the future success of DELs as true discovery modalities, rather than just 'a way to make many compounds,' is to go beyond physical binding to functional or even phenotypic assays with the capability to probe the biological system.
引用
收藏
页码:735 / 753
页数:19
相关论文
共 147 条
[1]   Small-Molecule Positive Allosteric Modulators of the β2-Adrenoceptor Isolated from DNA-Encoded Libraries [J].
Ahn, Seungkirl ;
Pani, Biswaranjan ;
Kahsai, Alem W. ;
Olsen, Eva K. ;
Husemoen, Gitte ;
Vestergaard, Mikkel ;
Jin, Lei ;
Zhao, Shuai ;
Wingler, Laura M. ;
Rambarat, Paula K. ;
Simhal, Rishabh K. ;
Xu, Thomas T. ;
Sun, Lillian D. ;
Shim, Paul J. ;
Staus, Dean P. ;
Huang, Li-Yin ;
Franch, Thomas ;
Chen, Xin ;
Lefkowitz, Robert J. .
MOLECULAR PHARMACOLOGY, 2018, 94 (02) :850-861
[2]   Allosteric "beta-blocker" isolated from a DNA-encoded small molecule library [J].
Ahn, Seungkirl ;
Kahsai, Alem W. ;
Pani, Biswaranjan ;
Wang, Qin-Ting ;
Zhao, Shuai ;
Wall, Alissa L. ;
Strachan, Ryan T. ;
Staus, Dean P. ;
Wingler, Laura M. ;
Sun, Lillian D. ;
Sinnaeve, Justine ;
Choi, Minjung ;
Cho, Ted ;
Xu, Thomas T. ;
Hansen, Gwenn M. ;
Burnett, Michael B. ;
Lamerdin, Jane E. ;
Bassoni, Daniel L. ;
Gavino, Bryant J. ;
Husemoen, Gitte ;
Olsen, Eva K. ;
Franch, Thomas ;
Costanzi, Stefano ;
Chen, Xin ;
Lefkowitz, Robert J. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2017, 114 (07) :1708-1713
[3]   MEMBRANE PROTEIN BIOPHYSICS [J].
Anson, Lesley .
NATURE, 2009, 459 (7245) :343-343
[4]   From haystack to needle: finding value with DNA encoded library technology at GSK [J].
Arico-Muendel, Christopher C. .
MEDCHEMCOMM, 2016, 7 (10) :1898-1909
[5]   Predicting Electrophoretic Mobility of Protein-Ligand Complexes for Ligands from DNA-Encoded Libraries of Small Molecules [J].
Bao, Jiayin ;
Krylova, Svetlana M. ;
Cherney, Leonid T. ;
Hale, Robert L. ;
Belyanskaya, Svetlana L. ;
Chiu, Cynthia H. ;
Shaginian, Alex ;
Arico-Muendel, Christopher C. ;
Krylov, Sergey N. .
ANALYTICAL CHEMISTRY, 2016, 88 (10) :5498-5506
[6]   Discovering Drugs with DNA-Encoded Library Technology: From Concept to Clinic with an Inhibitor of Soluble Epoxide Hydrolase [J].
Belyanskaya, Svetlana L. ;
Ding, Yun ;
Callahan, James F. ;
Lazaar, Aili L. ;
Israel, David I. .
CHEMBIOCHEM, 2017, 18 (09) :837-842
[7]   Impact of a Central Scaffold on the Binding Affinity of Fragment Pairs Isolated from DNA-Encoded Self-Assembling Chemical Libraries [J].
Bigatti, Martina ;
Dal Corso, Alberto ;
Vanetti, Sara ;
Cazzamalli, Samuele ;
Rieder, Ulrike ;
Scheuermann, Jorg ;
Neri, Dario ;
Sladojevich, Filippo .
CHEMMEDCHEM, 2017, 12 (21) :1748-1752
[8]  
Blakskjaer P., 2012, WO patent, Patent No. [2012041633 A1, 2012041633]
[9]   Yeast surface display for screening combinatorial polypeptide libraries [J].
Boder, ET ;
Wittrup, KD .
NATURE BIOTECHNOLOGY, 1997, 15 (06) :553-557
[10]   ENCODED COMBINATORIAL CHEMISTRY [J].
BRENNER, S ;
LERNER, RA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (12) :5381-5383