The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication

被引：291

作者：

Wang, Muhua ^{[1
]}

Yu, Yeisoo ^{[1
]}

Haberer, Georg ^{[2
]}

Marri, Pradeep Reddy ^{[3
]}

Fan, Chuanzhu ^{[1
,4
]}

Goicoechea, Jose Luis ^{[1
]}

Zuccolo, Andrea ^{[5
]}

Song, Xiang ^{[1
]}

Kudrna, Dave ^{[1
]}

Ammiraju, Jetty S. S. ^{[1
,6
]}

Cossu, Rosa Maria ^{[7
]}

Maldonado, Carlos ^{[1
]}

Chen, Jinfeng ^{[8
]}

Lee, Seunghee ^{[1
]}

Sisneros, Nick ^{[1
]}

de Baynast, Kristi ^{[1
]}

Golser, Wolfgang ^{[1
]}

Wissotski, Marina ^{[1
]}

Kim, Woojin ^{[1
]}

Sanchez, Paul ^{[1
,9
]}

Ndjiondjop, Marie-Noelle ^{[10
]}

Sanni, Kayode ^{[10
]}

Long, Manyuan ^{[11
]}

Carney, Judith ^{[12
]}

Panaud, Olivier ^{[13
]}

Wicker, Thomas ^{[14
]}

Machado, Carlos A. ^{[15
]}

Chen, Mingsheng ^{[8
]}

Mayer, Klaus F. X. ^{[2
]}

Rounsley, Steve

Wing, Rod A. ^{[1
]}

机构：

[1] Univ Arizona, Sch Plant Sci, Arizona Genom Inst, Tucson, AZ 85721 USA

[2] Helmholtz Ctr Munich, Neuherberg, Germany

[3] Dow AgroSci, Indianapolis, IN USA

[4] Wayne State Univ, Dept Biol Sci, Detroit, MI 48202 USA

[5] Scuola Super Sant Anna, Inst Life Sci, Pisa, Italy

[6] DuPont Pioneer, Johnston, IA USA

[7] Univ Pisa, Dept Agr Food & Environm, Pisa, Italy

[8] Chinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing, Peoples R China

[9] US Arid Land Agr Res Ctr, Maricopa, AZ USA

[10] Africa Rice Ctr, Cotonou, Benin

[11] Univ Chicago, Dept Ecol & Evolut, Chicago, IL 60637 USA

[12] Univ Calif Los Angeles, Inst Environm & Sustainabil, Dept Geog, Los Angeles, CA USA

[13] Univ Perpignan, UMR CNRS Inst Rech Devel, Lab Genome & Dev Plantes, F-66025 Perpignan, France

[14] Univ Zurich, Inst Plant Biol, CH-8008 Zurich, Switzerland

[15] Univ Maryland, Dept Biol, College Pk, MD 20742 USA

来源：

NATURE GENETICS | 2014年 / 46卷 / 09期

基金：

美国国家科学基金会;

关键词：

SELECTIVE SWEEPS; GENE; ALIGNMENT; SATIVA; EVOLUTION; ENCODES; PROTEIN; ORIGIN; TOOL; RETROTRANSPOSONS;

D O I：

10.1038/ng.3044

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

The cultivation of rice in Africa dates back more than 3,000 years. Interestingly, African rice is not of the same origin as Asian rice (Oryza sativa L.) but rather is an entirely different species (i.e., Oryza glaberrima Steud.). Here we present a high-quality assembly and annotation of the O. glaberrima genome and detailed analyses of its evolutionary history of domestication and selection. Population genomics analyses of 20 O. glaberrima and 94 Oryza barthii accessions support the hypothesis that O. glaberrima was domesticated in a single region along the Niger river as opposed to noncentric domestication events across Africa. We detected evidence for artificial selection at a genome-wide scale, as well as with a set of O. glaberrima genes orthologous to O. sativa genes that are known to be associated with domestication, thus indicating convergent yet independent selection of a common set of genes during two geographically and culturally distinct domestication processes.

引用

页码：982 / +

页数：10

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