An expanding arsenal of experimental methods yields an explosion of insights into protein folding mechanisms

被引:180
作者
Bartlett, Alice I.
Radford, Sheena E. [1 ]
机构
[1] Univ Leeds, Astbury Ctr Struct Mol Biol, Leeds, W Yorkshire, England
基金
英国生物技术与生命科学研究理事会;
关键词
NONEXPONENTIAL RELAXATION KINETICS; SINGLE-MOLECULE FLUORESCENCE; TRANSITION-STATE ENSEMBLE; PHI-VALUE ANALYSIS; NMR-SPECTROSCOPY; DENATURED STATE; UNRELIABLE SIGNATURES; UNFOLDING PATHWAYS; CIRCULAR-DICHROISM; CRYSTAL-STRUCTURE;
D O I
10.1038/nsmb.1592
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In recent years, improvements in experimental techniques and enhancements in computing power have revolutionized our understanding of the mechanisms of protein folding. By combining insights gained from theory, experiment and simulation we are moving toward an atomistic view of folding landscapes. Future challenges involve exploiting the knowledge gained and methods developed to enable us to elucidate a molecular description of folding dynamics in the complex environment of the cell.
引用
收藏
页码:582 / 588
页数:7
相关论文
共 107 条
[1]   Transition states for protein folding using molecular dynamics and experimental restraints [J].
Allen, Lucy R. ;
Paci, Emanuele .
JOURNAL OF PHYSICS-CONDENSED MATTER, 2007, 19 (28)
[2]   Protein dynamics from time resolved UV Raman spectroscopy [J].
Balakrishnan, Gurusamy ;
Weeks, Colin L. ;
Ibrahim, Mohammed ;
Soldatova, Alexandra V. ;
Spiro, Thomas G. .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2008, 18 (05) :623-629
[3]   Adapting proteostasis for disease intervention [J].
Balch, William E. ;
Morimoto, Richard I. ;
Dillin, Andrew ;
Kelly, Jeffery W. .
SCIENCE, 2008, 319 (5865) :916-919
[4]   Intermediates: ubiquitous species on folding energy landscapes? [J].
Brockwell, David J. ;
Radford, Sheena E. .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2007, 17 (01) :30-37
[5]   FUNNELS, PATHWAYS, AND THE ENERGY LANDSCAPE OF PROTEIN-FOLDING - A SYNTHESIS [J].
BRYNGELSON, JD ;
ONUCHIC, JN ;
SOCCI, ND ;
WOLYNES, PG .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 1995, 21 (03) :167-195
[6]   Comparison of successive transition states for folding reveals alternative early folding pathways of two homologous proteins [J].
Calosci, Nicoletta ;
Chi, Celestine N. ;
Richter, Barbara ;
Camilloni, Carlo ;
Engstrom, Ake ;
Eklund, Lars ;
Travaglini-Allocatelli, Carlo ;
Gianni, Stefano ;
Vendruscolo, Michele ;
Jemth, Per .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (49) :19241-19246
[7]   Backtracking on the folding landscape of the β-trefoil protein interleukin-1β? [J].
Capraro, Dominique T. ;
Roy, Melinda ;
Onuchic, Jose N. ;
Jennings, Patricia A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (39) :14844-14848
[8]   Direct observation of the three-state folding of a single protein molecule [J].
Cecconi, C ;
Shank, EA ;
Bustamante, C ;
Marqusee, S .
SCIENCE, 2005, 309 (5743) :2057-2060
[9]   Residue-level interrogation of macromolecular crowding effects on protein stability [J].
Charlton, Lisa M. ;
Barnes, Christopher O. ;
Li, Conggang ;
Orans, Jillian ;
Young, Gregory B. ;
Pielak, Gary J. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (21) :6826-6830
[10]   Effects of crowding and confinement on the structures of the transition state ensemble in proteins [J].
Cheung, Margaret S. ;
Thirumalai, D. .
JOURNAL OF PHYSICAL CHEMISTRY B, 2007, 111 (28) :8250-8257