Enhanced channeling carbon through pathways: shikimate/chorismate, benzenoid-phenylopropanoid or 2-C-methyl-D-erythritol 4-phosphate (MEP) provides a multitude of secondary metabolites and cell wall components and allows plants response to environmental stresses. Through the biosynthetic pathways, different secondary metabolites, like tocopherols (TCs), are bind to mutual dependencies and metabolic loops, that are not yet fully understood. We compared, in parallel, the influence of alpha- and gamma-TCs on metabolites involved in osmoprotective/antioxidative response, and physico-chemical modification of plasma membrane and cell wall. We studied Arabidopsis thaliana Columbia ecotype (WT), mutant vte1 deficient in alpha- and gamma-TCs, mutant vte4 overaccumulating gamma-TC instead of alpha-TC, and transgenic line tmt over-accumulating alpha-TC; exposed to NaCl. The results indicate that salt stress activates beta-carboxylation processes in WT plants and in plants with altered TCs accumulation. In alpha-TC-deficient plants, NaCl causes ACC decrease, but does not change SA, whose concentration remains higher than in alpha-TC accumulating plants. alpha/gamma-TCs contents influence carbohydrates, poliamines, phenolic (caffeic, ferrulic, cinnamic) acids accumulation patterns. Salinity results in increased detection of the LM5 galactan and LM19 homogalacturonan epitopes in alpha-TC accumulating plants, and the LM6 arabinan and MAC207 AGP epitopes in alpha-TC deficient mutants. Parallel, plants with altered TCs composition show decreased both the cell turgor and elastic modulus determined at the individual cell level. alpha-TC deficient plants reveal lower values of cell turgor and elastic modulus, but higher cell hydraulic conductivity than alpha-TC accumulating plants. Under salt stress, alpha-TC shows stronger regulatory effect than gamma-TC through the impact on chloroplastic biosynthetic pathways and ROS/osmotic-modulating compounds.