What Determines the Selectivity of Arginine Dihydroxylation by the Nonheme Iron Enzyme OrfP?

被引:30
作者
Ali, Hafiz Saqib [1 ,2 ]
Henchman, Richard H. [1 ,2 ]
de Visser, Sam P. [1 ,3 ]
机构
[1] Univ Manchester, Manchester Inst Biotechnol, 131 Princess St, Manchester M1 7DN, Lancs, England
[2] Univ Manchester, Dept Chem, Oxford Rd, Manchester M13 9PL, Lancs, England
[3] Univ Manchester, Dept Chem Engn & Analyt Sci, Oxford Rd, Manchester M13 9PL, Lancs, England
关键词
density functional theory; enzyme mechanism; enzyme modelling; hydroxylation; nonheme; QUANTUM MECHANICS/MOLECULAR MECHANICS; KETOGLUTARATE DIOXYGENASE TAUD; 2-HIS-1-CARBOXYLATE FACIAL TRIAD; C-H HYDROXYLATION; DEPENDENT DIOXYGENASES; IRON(IV)-OXO OXIDANTS; OXYGEN ACTIVATION; BIOSYNTHESIS; INSIGHTS; TAURINE;
D O I
10.1002/chem.202004019
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The nonheme iron enzyme OrfP reacts with l-Arg selectively to form the 3R,4R-dihydroxyarginine product, which in mammals can inhibit the nitric oxide synthase enzymes involved in blood pressure control. To understand the mechanisms of dioxygen activation of l-Arg by OrfP and how it enables two sequential oxidation cycles on the same substrate, we performed a density functional theory study on a large active site cluster model. We show that substrate binding and positioning in the active site guides a highly selective reaction through C-3-H hydrogen atom abstraction. This happens despite the fact that the C-3-H and C-4-H bond strengths of l-Arg are very similar. Electronic differences in the two hydrogen atom abstraction pathways drive the reaction with an initial C-3-H activation to a low-energy (5)sigma-pathway, while substrate positioning destabilizes the C-4-H abstraction and sends it over the higher-lying (5)pi-pathway. We show that substrate and monohydroxylated products are strongly bound in the substrate binding pocket and hence product release is difficult and consequently its lifetime will be long enough to trigger a second oxygenation cycle.
引用
收藏
页码:1795 / 1809
页数:15
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