DDBJ in preparation for overview of research activities behind data submissions

被引:29
作者
Okubo, Kousaku [1 ]
Sugawara, Hideaki [1 ]
Gojobori, Takashi [1 ]
Tateno, Yoshio [1 ]
机构
[1] Natl Inst Genet, Res Org Informat & Syst, Ctr Informat Biol & DNA Data Bank Japan, Mishima, Shizuoka 4118540, Japan
关键词
D O I
10.1093/nar/gkj111
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In the past year, DDBJ (http://www.ddbj.nig.ac.jp) collected and released 1 956 826 entries or 1 741 313 111 bases. The released data include similar to 90 000 ESTs and cDNAs of Macaca fascicularis, and 280 million bases of mouse GSS. In addition to the data collection, we have indexed the submitted data to the International Nucleotide Sequence Database Collaboration (INSDC, http://www.insdc.org) to classify the entries into research projects behind data submissions. They are expected to be useful to the data submitters and users for enhancing the data submission, retrieval and systematic data analyses at INSDC. The results of indexing also allow one to grasp research projects in life sciences that promoted and produced the DNA sequences submitted to INSDC.
引用
收藏
页码:D6 / D9
页数:4
相关论文
共 11 条
[1]   Contribution of Asian mouse subspecies Mus musculus molossinus to genomic constitution of strain C57BL/6J, as defined by BAC-end sequence-SKIP analysis [J].
Abe, K ;
Noguchi, H ;
Tagawa, K ;
Yuzuriha, M ;
Toyoda, A ;
Kojima, T ;
Ezawa, K ;
Saitou, N ;
Hattori, M ;
Sakaki, Y ;
Moriwaki, K ;
Shiroishi, T .
GENOME RESEARCH, 2004, 14 (12) :2439-2447
[2]   COMPLEMENTARY-DNA SEQUENCING - EXPRESSED SEQUENCE TAGS AND HUMAN GENOME PROJECT [J].
ADAMS, MD ;
KELLEY, JM ;
GOCAYNE, JD ;
DUBNICK, M ;
POLYMEROPOULOS, MH ;
XIAO, H ;
MERRIL, CR ;
WU, A ;
OLDE, B ;
MORENO, RF ;
KERLAVAGE, AR ;
MCCOMBIE, WR ;
VENTER, JC .
SCIENCE, 1991, 252 (5013) :1651-1656
[3]  
BLATTNER FR, 1997, SCIENCE, V277, P1432
[4]   Genome Information Broker (GIB): data retrieval and comparative analysis system for completed microbial genomes and more [J].
Fumoto, M ;
Miyazaki, S ;
Sugawara, H .
NUCLEIC ACIDS RESEARCH, 2002, 30 (01) :66-68
[5]   CIBEX: Center for information biology gene EXpression database [J].
Ikeo, K ;
Ishi-i, J ;
Tamura, T ;
Gojobori, T ;
Tateno, Y .
COMPTES RENDUS BIOLOGIES, 2003, 326 (10-11) :1079-1082
[6]   A COMMON LANGUAGE FOR PHYSICAL MAPPING OF THE HUMAN GENOME [J].
OLSON, M ;
HOOD, L ;
CANTOR, C ;
BOTSTEIN, D .
SCIENCE, 1989, 245 (4925) :1434-1435
[7]   Database divisions and homology search files: A guide for the perplexed [J].
Ouellette, BFF ;
Boguski, MS .
GENOME RESEARCH, 1997, 7 (10) :952-955
[8]   Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms [J].
Rondon, MR ;
August, PR ;
Bettermann, AD ;
Brady, SF ;
Grossman, TH ;
Liles, MR ;
Loiacono, KA ;
Lynch, BA ;
MacNeil, IA ;
Minor, C ;
Tiong, CL ;
Gilman, M ;
Osburne, MS ;
Clardy, J ;
Handelsman, J ;
Goodman, RM .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2000, 66 (06) :2541-2547
[9]   GENOMIC SEQUENCE SAMPLING - A STRATEGY FOR HIGH-RESOLUTION SEQUENCE-BASED PHYSICAL MAPPING OF COMPLEX GENOMES [J].
SMITH, MW ;
HOLMSEN, AL ;
WEI, YH ;
PETERSON, M ;
EVANS, GA .
NATURE GENETICS, 1994, 7 (01) :40-47
[10]   The EMBL Nucleotide Sequence Database: major new developments [J].
Stoesser, G ;
Baker, W ;
van den Broek, A ;
Garcia-Pastor, M ;
Kanz, C ;
Kulikova, T ;
Leinonen, R ;
Lin, Q ;
Lombard, V ;
Lopez, R ;
Mancuso, R ;
Nardone, F ;
Stoehr, P ;
Tuli, MA ;
Tzouvara, K ;
Vaughan, R .
NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :17-22