Looking into DNA breathing dynamics via quantum physics

被引:6
作者
Wu, Lian-Ao [1 ,2 ]
Wu, Stephen S. [3 ]
Segal, Dvira [4 ,5 ]
机构
[1] Univ Basque Country, EHU UPV, Ikerbasque Basque Fdn Sci, Bilbao 48080, Spain
[2] Univ Basque Country, EHU UPV, Dept Theoret Phys & Hist Sci, Bilbao 48080, Spain
[3] Queens Univ, Dept Life Sci, Kingston, ON K7L 3N6, Canada
[4] Univ Toronto, Dept Chem, Toronto, ON M5S 3H6, Canada
[5] Univ Toronto, Ctr Quantum Informat & Quantum Control, Toronto, ON M5S 3H6, Canada
来源
PHYSICAL REVIEW E | 2009年 / 79卷 / 06期
关键词
All Open Access; Green;
D O I
10.1103/PhysRevE.79.061901
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
We study generic aspects of bubble dynamics in DNA under time-dependent perturbations, for example, temperature change, by mapping the associated Fokker-Planck equation to a quantum time-dependent Schrodinger equation with imaginary time. In the static case we show that the eigenequation is exactly the same as that of the beta-deformed nuclear liquid drop model, without the issue of noninteger angular momentum. A universal breathing dynamics is demonstrated by using an approximate method in quantum mechanics. The calculated bubble autocorrelation function qualitatively agrees with experimental data. Under time-dependent modulations, utilizing the adiabatic approximation, bubble properties reveal memory effects.
引用
收藏
页数:5
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