The global catalogue of microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species

被引：30

作者：

Wu, Linhuan ^{[1
,2
,3
]}

McCluskey, Kevin ^{[4
,5
]}

Desmeth, Philippe ^{[4
,6
]}

Liu, Shuangjiang ^{[2
,4
]}

Hideaki, Sugawara ^{[7
]}

Yin, Ye ^{[8
]}

Moriya, Ohkuma ^{[9
]}

Itoh, Takashi ^{[9
]}

Kim, Cha Young ^{[10
]}

Lee, Jung-Sook ^{[10
]}

Zhou, Yuguang ^{[11
]}

Kawasaki, Hiroko ^{[12
]}

Hazbon, Manzour Hernando ^{[13
]}

Robert, Vincent ^{[14
]}

Boekhout, Teun ^{[14
,15
,16
]}

Lima, Nelson ^{[17
]}

Evtushenko, Lyudmila ^{[18
]}

Boundy-Mills, Kyria ^{[4
,19
]}

Bunk, Boyke ^{[20
]}

Moore, Edward R. B. ^{[21
]}

Eurwilaichitr, Lily ^{[4
,22
]}

Ingsriswang, Supawadee ^{[22
]}

Shah, Heena ^{[23
]}

Yao, Su ^{[24
]}

Jin, Tao ^{[8
]}

Huang, Jinqun ^{[8
]}

Shi, Wenyu ^{[1
]}

Sun, Qinglan ^{[1
]}

Fan, Guomei ^{[1
]}

Li, Wei ^{[1
]}

Li, Xian ^{[1
]}

Kurtboke, Ipek ^{[4
,25
]}

Ma, Juncai ^{[1
,2
,3
,4
]}

机构：

[1] Chinese Acad Sci, Inst Microbiol, Microbial Resource & Big Data Ctr, Beijing 100101, Peoples R China

[2] Chinese Acad Sci, Inst Microbiol, State Key Lab Microbial Resources, Beijing 100101, Peoples R China

[3] WFCC MIRCEN World Data Ctr Microorganisms, Beijing 100101, Peoples R China

[4] World Federat Culture Collect WFCC, Beijing, Peoples R China

[5] Kansas State Univ, Fungal Genet Stock Ctr, Manhattan, KS 66506 USA

[6] Belgian Sci Policy Off, Belgian Coordinated Collect Microorganisms Progra, B-2311050 Brussels, Belgium

[7] Natl Inst Genet, Mishima, Shizuoka 4118540, Japan

[8] BGI Shenzhen, BGI Genom, Shenzhen 518083, Peoples R China

[9] RIKEN, BioResource Ctr, Japan Collect Microorganisms Microbe Div, Koyadai 3-1-1, Tsukuba, Ibaraki 3050074, Japan

[10] KRIBB, Korean Collect Type Cultures, 181 Ipsin Gil, Jeongeup Si 56212, Jeollabuk Do, South Korea

[11] Chinese Acad Sci, Inst Microbiol, China Gen Microbiol Culture Collect Ctr, Beijing 10010, Peoples R China

[12] Natl Inst Technol & Evaluat, NITE Biol Resource Ctr, 2-5-8 Kazusakamatari, Kisarazu, Chiba 2920818, Japan

[13] Amer Type Culture Collect, 10801 Univ Blvd, Manassas, VA 20110 USA

[14] Westerdijk Fungal Biodivers Inst, NL-3534 CT Utrecht, Netherlands

[15] Univ Amsterdam, Inst Biodivers & Ecosyst Dynam, Spui 21, NL-1012 WX Amsterdam, Netherlands

[16] Shanghai Changzheng Hosp, Shanghai Inst Mycol, Shanghai Key Lab Mol Med Mycol, Shanghai 200003, Peoples R China

[17] Micoteca Univ Minho, Biol Engn Ctr, P-4710057 Braga, Portugal

[18] RAS, GK Skryabin Inst Biochem & Physiol Microorganisms, All Russian Collect Microorganisms, Moscow 142290, Russia

[19] Univ Calif Davis, Food Sci & Technol Dept, Phaff Yeast Culture Collect, 1 Shields Ave, Davis, CA 95616 USA

[20] Leibniz Inst DSMZ German Collect Microorganisms &, D-38124 Braunschweig, Germany

[21] Univ Gothenburg, Sahlgrenska Acad, CCUG, S-41346 Gothenburg, Sweden

[22] Bangkok Natl Sci & Technol Dev Agcy, Thailand Bioresource Res Ctr, Natl Ctr Genet Engn & Biotechnol, Bioresources Technol Unit, Bangkok, Thailand

[23] Natl Collect Type Cultures, Publ Hlth England, Salisbury SP4 0JG, Wilts, England

[24] China Ctr Ind Culture Collect, Beijing 100015, Peoples R China

[25] Univ Sunshine Coast, Fac Sci Hlth Educ & Engn, Maroochydore, Qld 4558, Australia

来源：

GIGASCIENCE | 2018年 / 7卷 / 05期

基金：

美国国家科学基金会;

关键词：

phylogenomics; taxonomy; biodiversity; whole-genome sequencing; type strains; bacteria; Archaea; fungi; DIVERSITY; BACTERIAL; TAXONOMY;

D O I：

10.1093/gigascience/giy026

中图分类号：

Q [生物科学];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Genomic information is essential for taxonomic, phylogenetic, and functional studies to comprehensively decipher the characteristics of microorganisms, to explore microbiomes through metagenomics, and to answer fundamental questions of nature and human life. However, large gaps remain in the available genomic sequencing information published for bacterial and archaeal species, and the gaps are even larger for fungal type strains. The Global Catalogue of Microorganisms (GCM) leads an internationally coordinated effort to sequence type strains and close gaps in the genomic maps of microorganisms. Hence, the GCM aims to promote research by deep-mining genomic data.

引用

页码：1 / 4

页数：4

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