Comparative genomics of the marine bacterial genus Glaciecola reveals the high degree of genomic diversity and genomic characteristic for cold adaptation

被引:67
|
作者
Qin, Qi-Long [1 ,2 ]
Xie, Bin-Bin [1 ,2 ]
Yu, Yong [3 ]
Shu, Yan-Li [1 ,2 ]
Rong, Jin-Cheng [1 ,2 ]
Zhang, Yan-Jiao [1 ,2 ]
Zhao, Dian-Li [1 ,2 ]
Chen, Xiu-Lan [1 ,2 ]
Zhang, Xi-Ying [1 ,2 ]
Chen, Bo [3 ]
Zhou, Bai-Cheng [1 ,2 ]
Zhang, Yu-Zhong [1 ,2 ]
机构
[1] Shandong Univ, Dept State Key Lab Microbial Technol, Jinan 250100, Peoples R China
[2] Shandong Univ, Dept Marine Biotechnol Res Ctr, Jinan 250100, Peoples R China
[3] Polar Res Inst China, SOA Key Lab Polar Sci, Shanghai 200136, Peoples R China
基金
中国国家自然科学基金;
关键词
UNIVERSAL COMMON ANCESTOR; SP-NOV; DEEP-SEA; STREPTOCOCCUS-PNEUMONIAE; SPECIES DEFINITION; PAN-GENOME; PSYCHROPHILIC BACTERIA; SEQUENCE ALIGNMENT; LIFE-STYLE; PROKARYOTES;
D O I
10.1111/1462-2920.12318
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
To what extent the genomes of different species belonging to one genus can be diverse and the relationship between genomic differentiation and environmental factor remain unclear for oceanic bacteria. With many new bacterial genera and species being isolated from marine environments, this question warrants attention. In this study, we sequenced all the type strains of the published species of Glaciecola, a recently defined cold-adapted genus with species from diverse marine locations, to study the genomic diversity and cold-adaptation strategy in this genus. The genome size diverged widely from 3.08 to 5.96Mb, which can be explained by massive gene gain and loss events. Horizontal gene transfer and new gene emergence contributed substantially to the genome size expansion. The genus Glaciecola had an open pan-genome. Comparative genomic research indicated that species of the genus Glaciecola had high diversity in genome size, gene content and genetic relatedness. This may be prevalent in marine bacterial genera considering the dynamic and complex environments of the ocean. Species of Glaciecola had some common genomic features related to cold adaptation, which enable them to thrive and play a role in biogeochemical cycle in the cold marine environments.
引用
收藏
页码:1642 / 1653
页数:12
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