The complete chloroplast genome of Vatica guangxiensis SL Mo (Dipterocarpaceae): genome structure and evolution

被引:2
作者
Deng, Li-Li [1 ]
Qin, Hui-Zhen [1 ]
Shi, Yan-Cai [1 ]
机构
[1] Guangxi Zhuang Autonomous Reg & Chinese Acad Sci, Guangxi Inst Bot, Guilin 541006, Guangxi, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2020年 / 5卷 / 03期
基金
中国国家自然科学基金;
关键词
Chloroplast genome; phylogenetic analysis; Dipterocarpaceae; Vatica guangxiensis;
D O I
10.1080/23802359.2020.1835580
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Vatica guangxiensis S.L. Mo is an evergreen large tree of Dipterocarpaceae. Herein, we assembled the complete chloroplast genome of Vatica guangxiensis by next-generation sequencing technologies. The complete chloroplast genome sequence of Vatica guangxiensis is 151,010 base pairs (bp) in length, including a pair of inverted repeat regions (IRs, 23,827 bp), one large single-copy region (LSC, 83,353 bp), one small single-copy region (SSC, 20,003 bp). Besides, the complete chloroplast genome contains 123 genes in total, including 83 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. Phylogenetic analysis showed that Vatica guangxiensis has the closest relationship with Vatica mangachapoi. Our study lay a foundation for further research of Vatica mangachapoi.
引用
收藏
页码:3750 / 3751
页数:2
相关论文
共 10 条
[1]   HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching [J].
Bi, Guiqi ;
Mao, Yunxiang ;
Xing, Qikun ;
Cao, Min .
GENOMICS, 2018, 110 (01) :18-22
[2]   Ultrafast Approximation for Phylogenetic Bootstrap [J].
Bui Quang Minh ;
Minh Anh Thi Nguyen ;
von Haeseler, Arndt .
MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (05) :1188-1195
[3]   Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices [J].
Chernomor, Olga ;
von Haeseler, Arndt ;
Bui Quang Minh .
SYSTEMATIC BIOLOGY, 2016, 65 (06) :997-1008
[4]  
Hall TA., 1999, Nucleic Acids Symposium Series, V41, P95, DOI DOI 10.1021/BK-1999-0734.CH008
[5]  
Jin JJ, 2018, BIORXIV 256479
[6]   Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data [J].
Kearse, Matthew ;
Moir, Richard ;
Wilson, Amy ;
Stones-Havas, Steven ;
Cheung, Matthew ;
Sturrock, Shane ;
Buxton, Simon ;
Cooper, Alex ;
Markowitz, Sidney ;
Duran, Chris ;
Thierer, Tobias ;
Ashton, Bruce ;
Meintjes, Peter ;
Drummond, Alexei .
BIOINFORMATICS, 2012, 28 (12) :1647-1649
[7]  
Li QM, 2002, ACTA BOT SIN, V44, P246
[8]  
Pachynocarpus JDH, 2007, FLORA CHINA VOL 13 D, V13, P52
[9]   MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0 [J].
Tamura, Koichiro ;
Dudley, Joel ;
Nei, Masatoshi ;
Kumar, Sudhir .
MOLECULAR BIOLOGY AND EVOLUTION, 2007, 24 (08) :1596-1599
[10]  
Wang S, 2004, CHINA SPECIES RED LI, V1, P367