The impact of single-cell RNA sequencing on understanding the functional organization of the immune system

被引:16
|
作者
Vegh, Peter [1 ]
Haniffa, Muzlifah [1 ]
机构
[1] Newcastle Univ, Inst Cellular Med, Newcastle Upon Tyne NE2 4HH, Tyne & Wear, England
基金
英国惠康基金;
关键词
RNA-seq; single-cell; monocyte; macrophage; dendritic cell; lymphocyte; INNATE LYMPHOID-CELLS; GENE-EXPRESSION DATA; REGULATORY NETWORK INFERENCE; T-CELLS; TRANSCRIPTIONAL HETEROGENEITY; HIGH-THROUGHPUT; SEQ DATA; HI-C; DIFFERENTIATION; PROGENITOR;
D O I
10.1093/bfgp/ely003
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Application of single-cell genomics technologies has revolutionized our approach to study the immune system. Unravelling the functional diversity of immune cells and their coordinated response is key to understanding immunity. Single-cell transcriptomics technologies provide high-dimensional assessment of the transcriptional states of immune cells and have been successfully applied to discover new immune cell types, reveal haematopoietic lineages, identify gene modules dictating immune responses and investigate lymphocyte antigen receptor diversity. In this review, we discuss the impact and applications of single-cell RNA sequencing technologies in immunology.
引用
收藏
页码:265 / 272
页数:8
相关论文
共 50 条
  • [1] Impact of single-cell RNA sequencing on understanding immune regulation
    Hu, Xueli
    Zhou, Xikun
    JOURNAL OF CELLULAR AND MOLECULAR MEDICINE, 2022, 26 (17) : 4645 - 4657
  • [2] Single-Cell RNA Sequencing Reveals Microevolution of the Stickleback Immune System
    Fuess, Lauren E.
    Bolnick, Daniel, I
    GENOME BIOLOGY AND EVOLUTION, 2023, 15 (04):
  • [3] Single-cell RNA sequencing to explore immune cell heterogeneity
    Papalexi, Efthymia
    Satija, Rahul
    NATURE REVIEWS IMMUNOLOGY, 2018, 18 (01) : 35 - 45
  • [4] Single-cell RNA sequencing to explore immune cell heterogeneity
    Efthymia Papalexi
    Rahul Satija
    Nature Reviews Immunology, 2018, 18 : 35 - 45
  • [5] Functional interrogation of immune cell types identified by single-cell RNA sequencing in alopecia areata
    Lee, E. Y.
    Dai, Z.
    Wang, E. H.
    Chang, E.
    Christiano, A. M.
    JOURNAL OF INVESTIGATIVE DERMATOLOGY, 2021, 141 (05) : S7 - S7
  • [6] Understanding the pathogenesis of infectious diseases by single-cell RNA sequencing
    Huang, Wanqiu
    Wang, Danni
    Yao, Yu-Feng
    MICROBIAL CELL, 2021, 8 (09): : 208 - 222
  • [7] Single cell and immunity: Better understanding immune cell heterogeneities with single-cell sequencing
    Chen, Dongsheng
    Luo, Yonglun
    Cheng, Genhong
    CLINICAL AND TRANSLATIONAL DISCOVERY, 2022, 2 (04):
  • [8] Single-Cell RNA Sequencing to Disentangle the Blood System
    Acosta, Jean
    Ssozi, Daniel
    van Galen, Peter
    ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY, 2021, 41 (03) : 1012 - 1018
  • [9] Decoding nervous system by single-cell RNA sequencing
    Ganlu Hu
    Guang-Zhong Wang
    Quantitative Biology, 2017, 5 (03) : 210 - 214
  • [10] Single-Cell RNA Sequencing Elucidates the Structure and Organization of Microbial Communities
    Brennan, Melanie A.
    Rosenthal, Adam Z.
    FRONTIERS IN MICROBIOLOGY, 2021, 12