Comparison of the phylogenetic performance of neodermatan mitochondrial protein-coding genes

被引:16
|
作者
Hardman, Michael [1 ]
Hardman, Lotta M. [1 ]
机构
[1] Vantaa Res Ctr, Finnish Forest Res Inst, Vantaa 01301, Finland
关键词
D O I
10.1111/j.1463-6409.2006.00248.x
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
We examined the ability of all protein-coding genes of 11 neodermatan mitochondrial genomes to recover the phylogeny of their combination. We subsampled randomly selected lengths (1-6000 bp) of contiguous sequence to consider the effect of length (100-6000 bp) on performance. All genes performed as well as randomly selected regions except ND2 (better) and ND5 (worse). All expected nodes were recovered (> 90% bootstrap) when 4.0 Kb had been sampled; 40 samples of 100 performed as well as four samples of 1000.
引用
收藏
页码:655 / 665
页数:11
相关论文
共 50 条
  • [1] Phylogenetic informativeness of mitochondrial protein-coding genes in Nematoda
    Ma, X.
    Baeza, J. A.
    Richards, V.
    Agudelo, P. A.
    PHYTOPATHOLOGY, 2020, 110 (07) : 4 - 4
  • [2] Phylogenetic performance of mitochondrial protein-coding genes in resolving relationships among vertebrates
    Zardoya, R
    Meyer, A
    MOLECULAR BIOLOGY AND EVOLUTION, 1996, 13 (07) : 933 - 942
  • [3] Phylogenetic performance of mitochondrial protein-coding genes of Oncomelania hupensis in resolving relationships between landscape populations
    Li, Shi-Zhu
    Zhang, Li
    Ma, Lin
    Hu, Wei
    Lv, Shan
    Liu, Qin
    Qian, Ying-Jun
    Wang, Qiang
    Zhou, Xiao-Nong
    JOURNAL OF SYSTEMATICS AND EVOLUTION, 2013, 51 (03) : 353 - 364
  • [4] Ablating all mitochondrial protein-coding genes
    Lou, Xin
    Shen, Bin
    NATURE BIOMEDICAL ENGINEERING, 2023, 7 (05) : 609 - 611
  • [5] Ablating all mitochondrial protein-coding genes
    Xin Lou
    Bin Shen
    Nature Biomedical Engineering, 2023, 7 : 609 - 611
  • [6] Subordinal artiodactyl relationships in the light of phylogenetic analysis of 12 mitochondrial protein-coding genes
    Ursing, BM
    Slack, KE
    Arnason, U
    ZOOLOGICA SCRIPTA, 2000, 29 (02) : 83 - 88
  • [7] Sequencing and Characterization of Mitochondrial Protein-Coding Genes for Schizothorax niger (Cypriniformes: Cyprinidae) with Phylogenetic Consideration
    Akhtar, Tasleem
    Ali, Ghazanfar
    Shafi, Nuzhat
    Akhtar, Wasim
    Khan, Abdul Hameed
    Latif, Zahid
    Wali, Abdul
    Ain-ul-Batool, Syeda
    Khan, Abdul Rehman
    Mumtaz, Sadia
    Altaf, Syed Iftikhar
    Khawaja, Sundus
    Sadia
    Khalid, Madiha
    Rehman, Fazal Ur
    Javid, Qudir
    BIOMED RESEARCH INTERNATIONAL, 2020, 2020
  • [8] Phylogenetic network and physicochemical properties of nonsynonymous mutations in the protein-coding genes of human mitochondrial DNA
    Moilanen, JS
    Majamaa, K
    MOLECULAR BIOLOGY AND EVOLUTION, 2003, 20 (08) : 1195 - 1210
  • [9] Expression of mitochondrial protein-coding genes in Tetrahymena pyriformis
    Edqvist, J
    Burger, G
    Gray, MW
    JOURNAL OF MOLECULAR BIOLOGY, 2000, 297 (02) : 381 - 393
  • [10] Accurate annotation of protein-coding genes in mitochondrial genomes
    Al Arab, Marwa
    zu Siederdissen, Christian Hoener
    Tout, Kifah
    Sahyoun, Abdullah H.
    Stadler, Peter F.
    Bernt, Matthias
    MOLECULAR PHYLOGENETICS AND EVOLUTION, 2017, 106 : 209 - 216