First DNA sequence reference library for mammals and plants of the Eastern Mediterranean Region

被引:4
作者
Boukhdoud, Liliane [1 ]
Saliba, Carole [1 ]
Parker, Lillian D. [2 ,3 ]
McInerney, Nancy Rotzel [2 ]
Mouawad, Ghiwa Ishak [1 ]
Kharrat, Mariane [1 ]
Kahale, Rhea [1 ]
Chahine, Tony [1 ]
Maldonado, Jesus E. [2 ,3 ]
Dagher-Kharrat, Magda Bou [1 ]
机构
[1] Univ St Joseph, Lab Biodiversite & Genom Fonct, Fac Sci, Campus Sci & Technol,BP 1514 Riad el Solh, Beirut 11072050, Lebanon
[2] Smithsonian Conservat Biol Inst, Natl Zool Pk, Ctr Conservat Genom, 3001 Connecticut Ave NW, Washington, DC 20008 USA
[3] George Mason Univ, Dept Biosci, Sch Syst Biol, 4400 Univ Dr, Fairfax, VA 22030 USA
关键词
Lebanon; biodiversity; Mediterranean basin; conservation; ancient DNA; DNA barcoding; LEPUS-CAPENSIS; IDENTIFICATION; EVOLUTION; BARCODES; AFRICAN; LEBANON; LIFE; L;
D O I
10.1139/gen-2019-0194
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The Mediterranean region is identified as one of the world's 36 biodiversity hotspots, with the Earth's most biologically rich yet threatened areas. Lebanon is a hub for Eastern Mediterranean Region (EMR) biodiversity with 9116 characterized plant and animal species (4486 fauna and 4630 flora). Using DNA barcoding as a tool has become crucial in the accurate identification of species in multiple contexts. It can also complement species morphological descriptions, which will add to our understanding of the biodiversity and richness of ecosystems and benefit conservation projects for endangered and endemic species. In this study, we create the first reference library of standard DNA markers for mammals and plants in the EMR, with a focus on endemic and endangered species. Plant leaves were collected from different nature reserves in Mount Lebanon, and mammal samples were obtained from taxidermized museum specimens or road kills. We generated the 12S rRNA sequences of 18 mammal species from 6 orders and 13 different families. We also obtained the trnL and rbcL barcode sequences of 52 plant species from 24 different families. Twenty-five plant species and two mammal species included in this study were sequenced for the first time using these markers.
引用
收藏
页码:39 / 49
页数:11
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